Hb_002003_130

Information

Type -
Description -
Location Contig2003: 176859-178052
Sequence    

Annotation

kegg
ID cic:CICLE_v10016637mg
description hypothetical protein
nr
ID KDO43506.1
description hypothetical protein CISIN_1g027843mg [Citrus sinensis]
swissprot
ID Q9SUI4
description Photosystem I reaction center subunit XI, chloroplastic OS=Arabidopsis thaliana GN=PSAL PE=1 SV=2
trembl
ID A0A067DY12
description Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g027843mg PE=4 SV=1
Gene Ontology
ID GO:0009538
description photosystem i reaction center subunit chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20295: 176763-178090
cDNA
(Sanger)
(ID:Location)		 003_J15.ab1: 176795-177988 , 008_E22.ab1: 176808-178021 , 008_N14.ab1: 176803-177983 , 010_I12.ab1: 176763-177909 , 010_K07.ab1: 176809-177984 , 015_B16.ab1: 176791-177802 , 024_B18.ab1: 176851-177899 , 030_E16.ab1: 176834-178030 , 031_N08.ab1: 176825-178022 , 033_I05.ab1: 176800-177993 , 033_P02.ab1: 176848-178025 , 036_A14.ab1: 176848-178029 , 038_J05.ab1: 176848-178020 , 042_E02.ab1: 176848-178021 , 042_N20.ab1: 176843-178025 , 043_N15.ab1: 176848-178037 , 044_M22.ab1: 176810-178019 , 045_A19.ab1: 176834-178051 , 046_D10.ab1: 176848-178056 , 047_H09.ab1: 176849-178029 , 051_N03.ab1: 176763-177987 , 052_G23.ab1: 176809-177988 , 052_O04.ab1: 176810-178030

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002003_130 0.0 - - hypothetical protein CISIN_1g027843mg [Citrus sinensis]
2 Hb_004128_170 0.0854636016 - - hypothetical protein POPTR_0016s08350g [Populus trichocarpa]
3 Hb_001584_210 0.0858875523 - - PREDICTED: chloroplast stem-loop binding protein of 41 kDa b, chloroplastic [Jatropha curcas]
4 Hb_007044_270 0.0885017345 - - PREDICTED: uncharacterized protein LOC105638707 isoform X2 [Jatropha curcas]
5 Hb_000077_380 0.093783687 - - PREDICTED: protochlorophyllide reductase [Jatropha curcas]
6 Hb_005063_060 0.0969891961 transcription factor TF Family: GNAT PREDICTED: uncharacterized protein LOC105647704 [Jatropha curcas]
7 Hb_000098_040 0.0999343358 - - Ferredoxin-2, chloroplast precursor, putative [Ricinus communis]
8 Hb_002333_040 0.1008544125 - - hypothetical protein CISIN_1g015895mg [Citrus sinensis]
9 Hb_001564_120 0.103063532 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP26-2, chloroplastic [Populus euphratica]
10 Hb_001007_070 0.1033021801 - - thioredoxin m(mitochondrial)-type, putative [Ricinus communis]
11 Hb_002852_010 0.1056482362 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
12 Hb_001999_230 0.1062976833 - - PREDICTED: uncharacterized protein LOC105630678 [Jatropha curcas]
13 Hb_000254_130 0.1071605915 - - Photosystem I reaction center subunit VI, chloroplast precursor, putative [Ricinus communis]
14 Hb_005694_120 0.1084486238 - - PREDICTED: calcium-transporting ATPase, endoplasmic reticulum-type [Jatropha curcas]
15 Hb_005054_120 0.110353629 - - PREDICTED: sedoheptulose-1,7-bisphosphatase, chloroplastic [Jatropha curcas]
16 Hb_116349_020 0.1107029835 - - PREDICTED: non-functional NADPH-dependent codeinone reductase 2-like [Jatropha curcas]
17 Hb_000307_100 0.1112340697 - - Plastocyanin A, chloroplast precursor, putative [Ricinus communis]
18 Hb_000329_430 0.113233702 transcription factor TF Family: bHLH PREDICTED: transcription factor UNE10 [Jatropha curcas]
19 Hb_005063_030 0.1133526486 - - Photosystem II reaction center W protein, chloroplast precursor, putative [Ricinus communis]
20 Hb_000352_230 0.1139754023 - - PREDICTED: glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_002003_130 Hb_002003_130 Hb_004128_170 Hb_004128_170 Hb_002003_130--Hb_004128_170 Hb_001584_210 Hb_001584_210 Hb_002003_130--Hb_001584_210 Hb_007044_270 Hb_007044_270 Hb_002003_130--Hb_007044_270 Hb_000077_380 Hb_000077_380 Hb_002003_130--Hb_000077_380 Hb_005063_060 Hb_005063_060 Hb_002003_130--Hb_005063_060 Hb_000098_040 Hb_000098_040 Hb_002003_130--Hb_000098_040 Hb_001007_070 Hb_001007_070 Hb_004128_170--Hb_001007_070 Hb_000099_120 Hb_000099_120 Hb_004128_170--Hb_000099_120 Hb_005694_120 Hb_005694_120 Hb_004128_170--Hb_005694_120 Hb_004128_170--Hb_000098_040 Hb_005111_040 Hb_005111_040 Hb_004128_170--Hb_005111_040 Hb_011344_030 Hb_011344_030 Hb_001584_210--Hb_011344_030 Hb_002333_040 Hb_002333_040 Hb_001584_210--Hb_002333_040 Hb_001584_210--Hb_007044_270 Hb_001517_010 Hb_001517_010 Hb_001584_210--Hb_001517_010 Hb_001195_290 Hb_001195_290 Hb_001584_210--Hb_001195_290 Hb_000320_370 Hb_000320_370 Hb_007044_270--Hb_000320_370 Hb_002809_030 Hb_002809_030 Hb_007044_270--Hb_002809_030 Hb_001958_060 Hb_001958_060 Hb_007044_270--Hb_001958_060 Hb_117807_020 Hb_117807_020 Hb_007044_270--Hb_117807_020 Hb_000230_420 Hb_000230_420 Hb_007044_270--Hb_000230_420 Hb_001277_350 Hb_001277_350 Hb_007044_270--Hb_001277_350 Hb_005063_030 Hb_005063_030 Hb_000077_380--Hb_005063_030 Hb_000101_330 Hb_000101_330 Hb_000077_380--Hb_000101_330 Hb_006570_030 Hb_006570_030 Hb_000077_380--Hb_006570_030 Hb_001975_100 Hb_001975_100 Hb_000077_380--Hb_001975_100 Hb_001564_120 Hb_001564_120 Hb_000077_380--Hb_001564_120 Hb_002852_010 Hb_002852_010 Hb_000077_380--Hb_002852_010 Hb_001775_100 Hb_001775_100 Hb_005063_060--Hb_001775_100 Hb_001257_110 Hb_001257_110 Hb_005063_060--Hb_001257_110 Hb_119600_030 Hb_119600_030 Hb_005063_060--Hb_119600_030 Hb_004117_200 Hb_004117_200 Hb_005063_060--Hb_004117_200 Hb_005063_060--Hb_001584_210 Hb_000352_230 Hb_000352_230 Hb_000098_040--Hb_000352_230 Hb_000307_100 Hb_000307_100 Hb_000098_040--Hb_000307_100 Hb_000098_040--Hb_001564_120 Hb_000329_430 Hb_000329_430 Hb_000098_040--Hb_000329_430 Hb_009771_090 Hb_009771_090 Hb_000098_040--Hb_009771_090 Hb_000098_040--Hb_002809_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
17.1456 137.089 923.32 649.685 11.6258 45.9315
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.24567 1.71224 5.51382 19.4313 2342

CAGE analysis