Hb_002004_010

Information

Type -
Description -
Location Contig2004: 40665-41978
Sequence    

Annotation

kegg
ID pop:POPTR_0006s20030g
description POPTRDRAFT_716804; CBL-interacting protein kinase 6
nr
ID ABJ91216.1
description CBL-interacting protein kinase 9 [Populus trichocarpa]
swissprot
ID O65554
description CBL-interacting serine/threonine-protein kinase 6 OS=Arabidopsis thaliana GN=CIPK6 PE=1 SV=1
trembl
ID A0MNJ6
description Non-specific serine/threonine protein kinase OS=Populus trichocarpa GN=CIPK9 PE=2 SV=1
Gene Ontology
ID GO:0005622
description cbl-interacting serine threonine-protein kinase 6-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002004_010 0.0 - - CBL-interacting protein kinase 9 [Populus trichocarpa]
2 Hb_002973_030 0.1028472351 - - CBL-interacting serine/threonine-protein kinase, putative [Ricinus communis]
3 Hb_013405_100 0.1229287283 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 8 [Jatropha curcas]
4 Hb_001541_160 0.1242583976 - - PREDICTED: probable E3 ubiquitin-protein ligase XERICO [Jatropha curcas]
5 Hb_050847_030 0.1271358234 - - PREDICTED: cytochrome P450 714A1-like [Populus euphratica]
6 Hb_002311_110 0.1281316956 - - conserved hypothetical protein [Ricinus communis]
7 Hb_002849_110 0.1284954947 - - hypothetical protein JCGZ_14362 [Jatropha curcas]
8 Hb_002066_010 0.1346190794 - - PREDICTED: acetylglutamate kinase, chloroplastic [Jatropha curcas]
9 Hb_013691_060 0.1360896962 - - PREDICTED: uncharacterized protein LOC105119066 [Populus euphratica]
10 Hb_004282_040 0.1373826467 desease resistance Gene Name: TIR PREDICTED: TMV resistance protein N-like isoform X2 [Jatropha curcas]
11 Hb_097634_010 0.1402050685 - - PREDICTED: UDP-glucuronate 4-epimerase 1 [Jatropha curcas]
12 Hb_000742_260 0.1404341766 - - hypothetical protein RCOM_1336320 [Ricinus communis]
13 Hb_005271_180 0.1416021068 - - Leucine-rich repeat receptor protein kinase EXS precursor, putative [Ricinus communis]
14 Hb_000836_210 0.1452952538 - - hypothetical protein JCGZ_14362 [Jatropha curcas]
15 Hb_009476_160 0.1455768418 - - RING-H2 finger protein ATL2N, putative [Ricinus communis]
16 Hb_005694_150 0.1461247473 - - PREDICTED: probable mitochondrial chaperone BCS1-A [Jatropha curcas]
17 Hb_001269_530 0.1465706365 - - ATP-binding cassette transporter, putative [Ricinus communis]
18 Hb_000342_120 0.1479953012 - - PREDICTED: probable protein phosphatase 2C 72 [Jatropha curcas]
19 Hb_004013_020 0.1528516337 - - PREDICTED: F-box protein SKIP2 [Jatropha curcas]
20 Hb_007292_050 0.1560349194 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance RPP13-like protein 4 [Jatropha curcas]

Gene co-expression network

sample Hb_002004_010 Hb_002004_010 Hb_002973_030 Hb_002973_030 Hb_002004_010--Hb_002973_030 Hb_013405_100 Hb_013405_100 Hb_002004_010--Hb_013405_100 Hb_001541_160 Hb_001541_160 Hb_002004_010--Hb_001541_160 Hb_050847_030 Hb_050847_030 Hb_002004_010--Hb_050847_030 Hb_002311_110 Hb_002311_110 Hb_002004_010--Hb_002311_110 Hb_002849_110 Hb_002849_110 Hb_002004_010--Hb_002849_110 Hb_002066_010 Hb_002066_010 Hb_002973_030--Hb_002066_010 Hb_000479_060 Hb_000479_060 Hb_002973_030--Hb_000479_060 Hb_000753_120 Hb_000753_120 Hb_002973_030--Hb_000753_120 Hb_000270_750 Hb_000270_750 Hb_002973_030--Hb_000270_750 Hb_002973_030--Hb_013405_100 Hb_065525_010 Hb_065525_010 Hb_013405_100--Hb_065525_010 Hb_097634_010 Hb_097634_010 Hb_013405_100--Hb_097634_010 Hb_001318_140 Hb_001318_140 Hb_013405_100--Hb_001318_140 Hb_001619_160 Hb_001619_160 Hb_013405_100--Hb_001619_160 Hb_005271_180 Hb_005271_180 Hb_013405_100--Hb_005271_180 Hb_000836_210 Hb_000836_210 Hb_001541_160--Hb_000836_210 Hb_001541_160--Hb_002849_110 Hb_000975_370 Hb_000975_370 Hb_001541_160--Hb_000975_370 Hb_004013_020 Hb_004013_020 Hb_001541_160--Hb_004013_020 Hb_001541_160--Hb_050847_030 Hb_005694_150 Hb_005694_150 Hb_050847_030--Hb_005694_150 Hb_000375_150 Hb_000375_150 Hb_050847_030--Hb_000375_150 Hb_000325_070 Hb_000325_070 Hb_050847_030--Hb_000325_070 Hb_000892_030 Hb_000892_030 Hb_050847_030--Hb_000892_030 Hb_000365_340 Hb_000365_340 Hb_050847_030--Hb_000365_340 Hb_178658_010 Hb_178658_010 Hb_002311_110--Hb_178658_010 Hb_002311_110--Hb_000836_210 Hb_002311_110--Hb_002849_110 Hb_000666_120 Hb_000666_120 Hb_002311_110--Hb_000666_120 Hb_005656_160 Hb_005656_160 Hb_002311_110--Hb_005656_160 Hb_002849_110--Hb_000836_210 Hb_001405_060 Hb_001405_060 Hb_002849_110--Hb_001405_060 Hb_005282_010 Hb_005282_010 Hb_002849_110--Hb_005282_010 Hb_000373_250 Hb_000373_250 Hb_002849_110--Hb_000373_250 Hb_000087_100 Hb_000087_100 Hb_002849_110--Hb_000087_100 Hb_004282_040 Hb_004282_040 Hb_002849_110--Hb_004282_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.6753 441.773 97.3095 328.886 9.21685 10.9966
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.35877 11.9217 7.33572 42.2025 194.214

CAGE analysis