Hb_002005_020

Information

Type -
Description -
Location Contig2005: 21850-35242
Sequence    

Annotation

kegg
ID rcu:RCOM_0634270
description hypothetical protein
nr
ID XP_002519741.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9S172
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0634270 PE=4 SV=1
Gene Ontology
ID GO:0016020
description magnesium transporter -like family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20298: 22177-22904 , PASA_asmbl_20299: 21964-22723 , PASA_asmbl_20300: 23482-34389 , PASA_asmbl_20301: 34808-35371 , PASA_asmbl_20302: 35961-45074 , PASA_asmbl_20303: 35961-45074
cDNA
(Sanger)
(ID:Location)		 027_J10.ab1: 21964-22723

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002005_020 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_004218_110 0.071636016 - - hypothetical protein PRUPE_ppa006329mg [Prunus persica]
3 Hb_000023_090 0.0717260459 - - mak, putative [Ricinus communis]
4 Hb_002759_060 0.0718507204 - - PREDICTED: protein LSM12 homolog A-like [Jatropha curcas]
5 Hb_011953_020 0.0738322595 - - PREDICTED: ORM1-like protein 1 [Jatropha curcas]
6 Hb_000567_120 0.0782914368 - - PREDICTED: transcription factor IIIB 50 kDa subunit-like [Jatropha curcas]
7 Hb_001519_050 0.0785457773 - - PREDICTED: protein RMD5 homolog A-like [Jatropha curcas]
8 Hb_000482_090 0.0801962498 - - PREDICTED: uncharacterized protein LOC105638145 [Jatropha curcas]
9 Hb_000635_150 0.081287369 - - mitochondrial import receptor subunit TOM20-2 family protein [Populus trichocarpa]
10 Hb_000985_060 0.0828441369 - - PREDICTED: protein transport protein SFT2-like isoform X1 [Jatropha curcas]
11 Hb_004254_120 0.0835743503 - - conserved hypothetical protein [Ricinus communis]
12 Hb_001014_040 0.0855503191 - - PREDICTED: uncharacterized protein LOC105647308 [Jatropha curcas]
13 Hb_005289_030 0.0861089923 - - PREDICTED: receptor homology region, transmembrane domain- and RING domain-containing protein 2 [Jatropha curcas]
14 Hb_158467_010 0.0865790337 - - transporter, putative [Ricinus communis]
15 Hb_001833_110 0.0884323918 - - conserved hypothetical protein [Ricinus communis]
16 Hb_002687_110 0.0889767981 - - PREDICTED: uncharacterized WD repeat-containing protein C343.04c isoform X1 [Jatropha curcas]
17 Hb_064441_010 0.0889780077 - - PREDICTED: MACPF domain-containing protein CAD1-like isoform X1 [Jatropha curcas]
18 Hb_000041_050 0.0889916643 - - PREDICTED: STE20/SPS1-related proline-alanine-rich protein kinase [Jatropha curcas]
19 Hb_000479_190 0.0892506379 - - conserved hypothetical protein [Ricinus communis]
20 Hb_004079_030 0.0895171389 - - PREDICTED: uncharacterized protein LOC105637701 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_002005_020 Hb_002005_020 Hb_004218_110 Hb_004218_110 Hb_002005_020--Hb_004218_110 Hb_000023_090 Hb_000023_090 Hb_002005_020--Hb_000023_090 Hb_002759_060 Hb_002759_060 Hb_002005_020--Hb_002759_060 Hb_011953_020 Hb_011953_020 Hb_002005_020--Hb_011953_020 Hb_000567_120 Hb_000567_120 Hb_002005_020--Hb_000567_120 Hb_001519_050 Hb_001519_050 Hb_002005_020--Hb_001519_050 Hb_004218_110--Hb_002759_060 Hb_025240_040 Hb_025240_040 Hb_004218_110--Hb_025240_040 Hb_001369_690 Hb_001369_690 Hb_004218_110--Hb_001369_690 Hb_004254_120 Hb_004254_120 Hb_004218_110--Hb_004254_120 Hb_000120_460 Hb_000120_460 Hb_004218_110--Hb_000120_460 Hb_000023_090--Hb_004218_110 Hb_148113_010 Hb_148113_010 Hb_000023_090--Hb_148113_010 Hb_000477_060 Hb_000477_060 Hb_000023_090--Hb_000477_060 Hb_000363_360 Hb_000363_360 Hb_000023_090--Hb_000363_360 Hb_003697_040 Hb_003697_040 Hb_000023_090--Hb_003697_040 Hb_001833_110 Hb_001833_110 Hb_002759_060--Hb_001833_110 Hb_027073_040 Hb_027073_040 Hb_002759_060--Hb_027073_040 Hb_003996_020 Hb_003996_020 Hb_002759_060--Hb_003996_020 Hb_002759_060--Hb_025240_040 Hb_000058_060 Hb_000058_060 Hb_002759_060--Hb_000058_060 Hb_093458_050 Hb_093458_050 Hb_011953_020--Hb_093458_050 Hb_029866_020 Hb_029866_020 Hb_011953_020--Hb_029866_020 Hb_003551_050 Hb_003551_050 Hb_011953_020--Hb_003551_050 Hb_011953_020--Hb_001519_050 Hb_001519_030 Hb_001519_030 Hb_011953_020--Hb_001519_030 Hb_008695_100 Hb_008695_100 Hb_000567_120--Hb_008695_100 Hb_001140_220 Hb_001140_220 Hb_000567_120--Hb_001140_220 Hb_000723_080 Hb_000723_080 Hb_000567_120--Hb_000723_080 Hb_000258_270 Hb_000258_270 Hb_000567_120--Hb_000258_270 Hb_004607_030 Hb_004607_030 Hb_000567_120--Hb_004607_030 Hb_000635_150 Hb_000635_150 Hb_001519_050--Hb_000635_150 Hb_000373_130 Hb_000373_130 Hb_001519_050--Hb_000373_130 Hb_000125_190 Hb_000125_190 Hb_001519_050--Hb_000125_190 Hb_004705_120 Hb_004705_120 Hb_001519_050--Hb_004705_120 Hb_000005_080 Hb_000005_080 Hb_001519_050--Hb_000005_080 Hb_002061_040 Hb_002061_040 Hb_001519_050--Hb_002061_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.59011 4.3598 3.66275 8.8084 7.23415 10.7499
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.439 13.9929 20.9599 8.79419 5.63015

CAGE analysis