Hb_002005_040

Information

Type -
Description -
Location Contig2005: 51089-58364
Sequence    

Annotation

kegg
ID rcu:RCOM_0634390
description Carboxyl-terminal-processing protease precursor, putative (EC:3.4.21.102)
nr
ID XP_012091901.1
description PREDICTED: carboxyl-terminal-processing peptidase 1, chloroplastic isoform X2 [Jatropha curcas]
swissprot
ID F4KHG6
description Carboxyl-terminal-processing peptidase 1, chloroplastic OS=Arabidopsis thaliana GN=CTPA1 PE=1 SV=1
trembl
ID A0A067JNY8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21675 PE=4 SV=1
Gene Ontology
ID GO:0005515
description carboxyl-terminal-processing peptidase chloroplastic isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20304: 51228-53423 , PASA_asmbl_20305: 56742-58017 , PASA_asmbl_20306: 54274-56981 , PASA_asmbl_20307: 58022-58350
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002005_040 0.0 - - PREDICTED: carboxyl-terminal-processing peptidase 1, chloroplastic isoform X2 [Jatropha curcas]
2 Hb_004055_160 0.056136248 - - PREDICTED: glyoxylate/succinic semialdehyde reductase 2, chloroplastic [Jatropha curcas]
3 Hb_001348_090 0.0785573228 - - PREDICTED: long chain acyl-CoA synthetase 9, chloroplastic [Jatropha curcas]
4 Hb_005116_100 0.0826878622 - - PREDICTED: uncharacterized protein LOC105649999 [Jatropha curcas]
5 Hb_002044_160 0.0876688831 - - PREDICTED: glyoxylate/succinic semialdehyde reductase 1 [Jatropha curcas]
6 Hb_000684_430 0.0929928259 - - PREDICTED: pentatricopeptide repeat-containing protein At5g02830, chloroplastic [Jatropha curcas]
7 Hb_001269_500 0.0936680998 - - PREDICTED: protein LOW PSII ACCUMULATION 3, chloroplastic-like isoform X2 [Populus euphratica]
8 Hb_002928_030 0.097104796 - - hypothetical protein CICLE_v10001788mg [Citrus clementina]
9 Hb_001649_030 0.097276904 - - PREDICTED: peptide deformylase 1B, chloroplastic [Jatropha curcas]
10 Hb_009687_020 0.0994234177 - - hypothetical protein JCGZ_10323 [Jatropha curcas]
11 Hb_006829_080 0.0997354488 - - PREDICTED: protein LHCP TRANSLOCATION DEFECT [Jatropha curcas]
12 Hb_158092_100 0.1000166211 - - PREDICTED: uncharacterized protein LOC105647301 [Jatropha curcas]
13 Hb_002374_450 0.1011563936 - - PREDICTED: chlorophyllide a oxygenase, chloroplastic [Jatropha curcas]
14 Hb_005618_080 0.1036918491 - - PREDICTED: protoporphyrinogen oxidase 1, chloroplastic [Jatropha curcas]
15 Hb_002217_140 0.104493995 - - PREDICTED: 30S ribosomal protein S1, chloroplastic [Nelumbo nucifera]
16 Hb_000579_040 0.1052557822 - - PREDICTED: putative GTP-binding protein 6 [Jatropha curcas]
17 Hb_004837_210 0.1070103526 - - PREDICTED: calcium-dependent protein kinase 8-like [Jatropha curcas]
18 Hb_000056_310 0.1077814676 - - PREDICTED: uncharacterized protein LOC105630433 [Jatropha curcas]
19 Hb_164926_010 0.1082954055 - - Granule-bound starch synthase 1, chloroplastic/amyloplastic [Gossypium arboreum]
20 Hb_003752_090 0.1088040479 - - chitinase, putative [Ricinus communis]

Gene co-expression network

sample Hb_002005_040 Hb_002005_040 Hb_004055_160 Hb_004055_160 Hb_002005_040--Hb_004055_160 Hb_001348_090 Hb_001348_090 Hb_002005_040--Hb_001348_090 Hb_005116_100 Hb_005116_100 Hb_002005_040--Hb_005116_100 Hb_002044_160 Hb_002044_160 Hb_002005_040--Hb_002044_160 Hb_000684_430 Hb_000684_430 Hb_002005_040--Hb_000684_430 Hb_001269_500 Hb_001269_500 Hb_002005_040--Hb_001269_500 Hb_004055_160--Hb_000684_430 Hb_009687_020 Hb_009687_020 Hb_004055_160--Hb_009687_020 Hb_006829_080 Hb_006829_080 Hb_004055_160--Hb_006829_080 Hb_004055_160--Hb_005116_100 Hb_004055_160--Hb_001348_090 Hb_002374_450 Hb_002374_450 Hb_001348_090--Hb_002374_450 Hb_004242_170 Hb_004242_170 Hb_001348_090--Hb_004242_170 Hb_024677_010 Hb_024677_010 Hb_001348_090--Hb_024677_010 Hb_000441_050 Hb_000441_050 Hb_001348_090--Hb_000441_050 Hb_148146_010 Hb_148146_010 Hb_005116_100--Hb_148146_010 Hb_005618_080 Hb_005618_080 Hb_005116_100--Hb_005618_080 Hb_000402_020 Hb_000402_020 Hb_005116_100--Hb_000402_020 Hb_001649_030 Hb_001649_030 Hb_005116_100--Hb_001649_030 Hb_158092_100 Hb_158092_100 Hb_002044_160--Hb_158092_100 Hb_000454_100 Hb_000454_100 Hb_002044_160--Hb_000454_100 Hb_000579_040 Hb_000579_040 Hb_002044_160--Hb_000579_040 Hb_002044_160--Hb_002374_450 Hb_002044_160--Hb_004055_160 Hb_001959_060 Hb_001959_060 Hb_000684_430--Hb_001959_060 Hb_002217_140 Hb_002217_140 Hb_000684_430--Hb_002217_140 Hb_000684_430--Hb_006829_080 Hb_000684_430--Hb_148146_010 Hb_001269_500--Hb_001649_030 Hb_000336_200 Hb_000336_200 Hb_001269_500--Hb_000336_200 Hb_001269_500--Hb_009687_020 Hb_000665_270 Hb_000665_270 Hb_001269_500--Hb_000665_270 Hb_000264_280 Hb_000264_280 Hb_001269_500--Hb_000264_280 Hb_006198_130 Hb_006198_130 Hb_001269_500--Hb_006198_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.33671 3.92002 17.3986 8.99663 2.89777 4.16967
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.08121 1.81364 1.71785 4.27928 25.1593

CAGE analysis