Hb_002005_110

Information

Type -
Description -
Location Contig2005: 98991-107935
Sequence    

Annotation

kegg
ID rcu:RCOM_0634540
description hypothetical protein
nr
ID XP_012091895.1
description PREDICTED: CTD small phosphatase-like protein 2 isoform X5 [Jatropha curcas]
swissprot
ID Q05D32
description CTD small phosphatase-like protein 2 OS=Homo sapiens GN=CTDSPL2 PE=1 SV=2
trembl
ID A0A067JNY6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21670 PE=4 SV=1
Gene Ontology
ID GO:0005515
description nli interacting factor family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20317: 99935-100302 , PASA_asmbl_20318: 101213-101461 , PASA_asmbl_20319: 102635-107905
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002005_110 0.0 - - PREDICTED: CTD small phosphatase-like protein 2 isoform X5 [Jatropha curcas]
2 Hb_003768_050 0.0783043621 - - PREDICTED: uncharacterized protein LOC105644152 isoform X1 [Jatropha curcas]
3 Hb_116086_010 0.0816278885 - - hypothetical protein JCGZ_14829 [Jatropha curcas]
4 Hb_013399_070 0.0923121999 - - PREDICTED: uncharacterized protein LOC105631409 isoform X1 [Jatropha curcas]
5 Hb_001864_060 0.0948299152 transcription factor TF Family: GeBP PREDICTED: mediator-associated protein 1-like [Jatropha curcas]
6 Hb_001080_230 0.0979391587 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105649979 [Jatropha curcas]
7 Hb_001828_130 0.0981661635 - - PREDICTED: transcription factor GTE8-like [Jatropha curcas]
8 Hb_001123_290 0.0990087955 - - PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 3 [Jatropha curcas]
9 Hb_005551_020 0.1013721485 - - PREDICTED: probable receptor protein kinase TMK1 [Jatropha curcas]
10 Hb_003747_100 0.101981778 - - PREDICTED: probable tyrosine--tRNA ligase, mitochondrial [Jatropha curcas]
11 Hb_005653_090 0.102256293 - - PREDICTED: protein HIRA isoform X1 [Jatropha curcas]
12 Hb_002864_010 0.1035031756 - - PREDICTED: regulator of nonsense transcripts 1 homolog [Jatropha curcas]
13 Hb_001767_140 0.103665545 - - PREDICTED: protein-tyrosine-phosphatase MKP1 [Jatropha curcas]
14 Hb_003866_080 0.1043260334 - - PREDICTED: uncharacterized protein LOC105639150 [Jatropha curcas]
15 Hb_008253_030 0.1050087713 - - PREDICTED: probable carboxylesterase 11 [Jatropha curcas]
16 Hb_001946_340 0.1050462735 - - PREDICTED: mediator of RNA polymerase II transcription subunit 17-like isoform X1 [Jatropha curcas]
17 Hb_004483_040 0.1051738776 - - hypothetical protein JCGZ_22047 [Jatropha curcas]
18 Hb_003030_060 0.1054561719 - - PREDICTED: regulation of nuclear pre-mRNA domain-containing protein 2-like [Jatropha curcas]
19 Hb_000173_490 0.1062535879 - - PREDICTED: F-box/LRR-repeat protein 4 isoform X2 [Jatropha curcas]
20 Hb_001104_190 0.106552336 - - PREDICTED: uncharacterized protein LOC105629451 [Jatropha curcas]

Gene co-expression network

sample Hb_002005_110 Hb_002005_110 Hb_003768_050 Hb_003768_050 Hb_002005_110--Hb_003768_050 Hb_116086_010 Hb_116086_010 Hb_002005_110--Hb_116086_010 Hb_013399_070 Hb_013399_070 Hb_002005_110--Hb_013399_070 Hb_001864_060 Hb_001864_060 Hb_002005_110--Hb_001864_060 Hb_001080_230 Hb_001080_230 Hb_002005_110--Hb_001080_230 Hb_001828_130 Hb_001828_130 Hb_002005_110--Hb_001828_130 Hb_002234_090 Hb_002234_090 Hb_003768_050--Hb_002234_090 Hb_000347_390 Hb_000347_390 Hb_003768_050--Hb_000347_390 Hb_000025_280 Hb_000025_280 Hb_003768_050--Hb_000025_280 Hb_005551_020 Hb_005551_020 Hb_003768_050--Hb_005551_020 Hb_001614_060 Hb_001614_060 Hb_003768_050--Hb_001614_060 Hb_000017_220 Hb_000017_220 Hb_003768_050--Hb_000017_220 Hb_001123_290 Hb_001123_290 Hb_116086_010--Hb_001123_290 Hb_000832_030 Hb_000832_030 Hb_116086_010--Hb_000832_030 Hb_116086_010--Hb_001864_060 Hb_003411_110 Hb_003411_110 Hb_116086_010--Hb_003411_110 Hb_155396_010 Hb_155396_010 Hb_116086_010--Hb_155396_010 Hb_000170_150 Hb_000170_150 Hb_013399_070--Hb_000170_150 Hb_013399_070--Hb_003768_050 Hb_001946_340 Hb_001946_340 Hb_013399_070--Hb_001946_340 Hb_000069_470 Hb_000069_470 Hb_013399_070--Hb_000069_470 Hb_001821_090 Hb_001821_090 Hb_013399_070--Hb_001821_090 Hb_000579_230 Hb_000579_230 Hb_013399_070--Hb_000579_230 Hb_004109_030 Hb_004109_030 Hb_001864_060--Hb_004109_030 Hb_008511_090 Hb_008511_090 Hb_001864_060--Hb_008511_090 Hb_003752_100 Hb_003752_100 Hb_001864_060--Hb_003752_100 Hb_001864_060--Hb_001828_130 Hb_000025_330 Hb_000025_330 Hb_001864_060--Hb_000025_330 Hb_000003_190 Hb_000003_190 Hb_001080_230--Hb_000003_190 Hb_000092_020 Hb_000092_020 Hb_001080_230--Hb_000092_020 Hb_000395_130 Hb_000395_130 Hb_001080_230--Hb_000395_130 Hb_003470_080 Hb_003470_080 Hb_001080_230--Hb_003470_080 Hb_002872_040 Hb_002872_040 Hb_001080_230--Hb_002872_040 Hb_003030_060 Hb_003030_060 Hb_001080_230--Hb_003030_060 Hb_011491_010 Hb_011491_010 Hb_001828_130--Hb_011491_010 Hb_002798_070 Hb_002798_070 Hb_001828_130--Hb_002798_070 Hb_000243_250 Hb_000243_250 Hb_001828_130--Hb_000243_250 Hb_000322_150 Hb_000322_150 Hb_001828_130--Hb_000322_150 Hb_002636_100 Hb_002636_100 Hb_001828_130--Hb_002636_100 Hb_012564_030 Hb_012564_030 Hb_001828_130--Hb_012564_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.05606 14.3198 4.97638 5.32751 3.77562 9.84917
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.8505 4.88008 6.21364 5.99829 5.47931

CAGE analysis