Hb_002006_020

Information

Type -
Description -
Location Contig2006: 10361-14236
Sequence    

Annotation

kegg
ID pop:POPTR_0011s16680g
description hypothetical protein
nr
ID XP_012092945.1
description PREDICTED: uncharacterized protein LOC105650638 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JBG9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05842 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20325: 10715-13955 , PASA_asmbl_20326: 10717-12920
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002006_020 0.0 - - PREDICTED: uncharacterized protein LOC105650638 [Jatropha curcas]
2 Hb_001489_060 0.0602386568 - - PREDICTED: uncharacterized protein LOC105649778 isoform X2 [Jatropha curcas]
3 Hb_063716_050 0.0609408378 - - PREDICTED: uncharacterized protein LOC105634866 [Jatropha curcas]
4 Hb_002477_070 0.0663119302 - - Charged multivesicular body protein 2a, putative [Ricinus communis]
5 Hb_003050_080 0.066938791 - - 40S ribosomal protein S14, putative [Ricinus communis]
6 Hb_002226_070 0.0684930405 - - PREDICTED: uncharacterized CRM domain-containing protein At3g25440, chloroplastic [Jatropha curcas]
7 Hb_004440_090 0.0695918557 - - PREDICTED: phosphopantetheine adenylyltransferase [Jatropha curcas]
8 Hb_000243_030 0.0703921834 - - PREDICTED: probable dimethyladenosine transferase [Jatropha curcas]
9 Hb_000926_250 0.0771619547 - - hypothetical protein POPTR_0011s08930g [Populus trichocarpa]
10 Hb_000832_140 0.0774386504 - - actin depolymerizing factor 4 [Hevea brasiliensis]
11 Hb_002214_040 0.0787858172 - - PREDICTED: tryptophan--tRNA ligase, cytoplasmic [Jatropha curcas]
12 Hb_004735_040 0.0798733614 - - PREDICTED: GTP-binding nuclear protein Ran1A-like [Jatropha curcas]
13 Hb_000189_620 0.0799161887 - - hypothetical protein JCGZ_23450 [Jatropha curcas]
14 Hb_000529_190 0.081726398 - - PREDICTED: magnesium-dependent phosphatase 1-like [Jatropha curcas]
15 Hb_000056_200 0.0848797319 - - 40S ribosomal S9-2 -like protein [Gossypium arboreum]
16 Hb_002107_130 0.0855911039 - - protein with unknown function [Ricinus communis]
17 Hb_000007_100 0.0858061286 - - PREDICTED: uncharacterized protein LOC105640717 [Jatropha curcas]
18 Hb_010436_070 0.085926525 - - PREDICTED: endoribonuclease Dicer homolog 4-like [Nicotiana tomentosiformis]
19 Hb_002686_020 0.0862808855 - - galactose-1-phosphate uridylyltransferase, putative [Ricinus communis]
20 Hb_001477_110 0.0884255743 - - prohibitin, putative [Ricinus communis]

Gene co-expression network

sample Hb_002006_020 Hb_002006_020 Hb_001489_060 Hb_001489_060 Hb_002006_020--Hb_001489_060 Hb_063716_050 Hb_063716_050 Hb_002006_020--Hb_063716_050 Hb_002477_070 Hb_002477_070 Hb_002006_020--Hb_002477_070 Hb_003050_080 Hb_003050_080 Hb_002006_020--Hb_003050_080 Hb_002226_070 Hb_002226_070 Hb_002006_020--Hb_002226_070 Hb_004440_090 Hb_004440_090 Hb_002006_020--Hb_004440_090 Hb_001489_060--Hb_063716_050 Hb_001489_060--Hb_003050_080 Hb_001489_060--Hb_002226_070 Hb_001821_010 Hb_001821_010 Hb_001489_060--Hb_001821_010 Hb_000056_200 Hb_000056_200 Hb_001489_060--Hb_000056_200 Hb_000103_560 Hb_000103_560 Hb_063716_050--Hb_000103_560 Hb_063716_050--Hb_003050_080 Hb_000529_190 Hb_000529_190 Hb_063716_050--Hb_000529_190 Hb_000832_140 Hb_000832_140 Hb_063716_050--Hb_000832_140 Hb_001604_080 Hb_001604_080 Hb_063716_050--Hb_001604_080 Hb_002214_040 Hb_002214_040 Hb_002477_070--Hb_002214_040 Hb_009838_080 Hb_009838_080 Hb_002477_070--Hb_009838_080 Hb_002477_070--Hb_000529_190 Hb_008648_010 Hb_008648_010 Hb_002477_070--Hb_008648_010 Hb_000059_370 Hb_000059_370 Hb_002477_070--Hb_000059_370 Hb_002686_020 Hb_002686_020 Hb_003050_080--Hb_002686_020 Hb_003050_080--Hb_000832_140 Hb_001540_010 Hb_001540_010 Hb_003050_080--Hb_001540_010 Hb_003050_080--Hb_000056_200 Hb_004032_010 Hb_004032_010 Hb_002226_070--Hb_004032_010 Hb_033834_040 Hb_033834_040 Hb_002226_070--Hb_033834_040 Hb_000926_250 Hb_000926_250 Hb_002226_070--Hb_000926_250 Hb_002226_070--Hb_000056_200 Hb_002226_070--Hb_000059_370 Hb_003005_020 Hb_003005_020 Hb_004440_090--Hb_003005_020 Hb_002391_300 Hb_002391_300 Hb_004440_090--Hb_002391_300 Hb_004440_090--Hb_063716_050 Hb_000046_280 Hb_000046_280 Hb_004440_090--Hb_000046_280 Hb_000398_180 Hb_000398_180 Hb_004440_090--Hb_000398_180 Hb_007426_230 Hb_007426_230 Hb_004440_090--Hb_007426_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.08901 2.20634 4.01454 4.58181 11.5318 10.4272
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.51143 16.4838 8.78341 4.69022 3.8636

CAGE analysis