Hb_002006_030

Information

Type -
Description -
Location Contig2006: 14889-19289
Sequence    

Annotation

kegg
ID pop:POPTR_0012s05580g
description POPTRDRAFT_806379; hAT dimerization domain-containing family protein
nr
ID XP_012092949.1
description PREDICTED: zinc finger BED domain-containing protein DAYSLEEPER [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JKR1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05843 PE=4 SV=1
Gene Ontology
ID GO:0003677
description zinc finger bed domain-containing protein daysleeper isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20327: 15010-17147 , PASA_asmbl_20329: 17383-18084
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002006_030 0.0 - - PREDICTED: zinc finger BED domain-containing protein DAYSLEEPER [Jatropha curcas]
2 Hb_009486_140 0.0778810738 - - PREDICTED: uncharacterized protein LOC105643248 [Jatropha curcas]
3 Hb_002660_010 0.0802310363 transcription factor TF Family: ARF PREDICTED: auxin response factor 18-like [Jatropha curcas]
4 Hb_002218_090 0.0917157549 - - Poly(rC)-binding protein, putative [Ricinus communis]
5 Hb_000684_470 0.0919772419 transcription factor TF Family: Orphans PREDICTED: two-component response regulator-like APRR7 [Jatropha curcas]
6 Hb_001862_210 0.0921840607 - - PREDICTED: LOW QUALITY PROTEIN: salutaridine reductase-like [Citrus sinensis]
7 Hb_070256_010 0.0928612527 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105630457 [Jatropha curcas]
8 Hb_000976_300 0.0929160756 - - PREDICTED: uncharacterized protein LOC105646229 [Jatropha curcas]
9 Hb_000329_320 0.09433202 - - PREDICTED: DNA ligase 1 [Jatropha curcas]
10 Hb_000059_380 0.0945569843 - - PREDICTED: uncharacterized protein LOC105648668 [Jatropha curcas]
11 Hb_156279_020 0.0957030436 - - ATP-dependent clp protease ATP-binding subunit clpx, putative [Ricinus communis]
12 Hb_002499_040 0.0965326115 - - PREDICTED: probable serine/threonine-protein kinase GCN2 isoform X2 [Jatropha curcas]
13 Hb_001946_290 0.0966320417 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 51-like isoform X1 [Jatropha curcas]
14 Hb_001158_070 0.0966930469 - - Protein DEK, putative [Ricinus communis]
15 Hb_010368_010 0.0973788008 - - RNA splicing protein mrs2, mitochondrial, putative [Ricinus communis]
16 Hb_002490_020 0.0975244932 - - peptidyl-tRNA hydrolase family protein [Populus trichocarpa]
17 Hb_002686_170 0.0981893805 - - PREDICTED: uncharacterized protein LOC105632645 isoform X1 [Jatropha curcas]
18 Hb_004254_090 0.0982724298 - - PREDICTED: cleavage stimulating factor 64 [Jatropha curcas]
19 Hb_000699_030 0.0983190715 - - PREDICTED: serine/threonine-protein phosphatase PP1-like isoform X2 [Jatropha curcas]
20 Hb_000329_710 0.0984574268 - - PREDICTED: E3 ubiquitin-protein ligase BRE1-like 1 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_002006_030 Hb_002006_030 Hb_009486_140 Hb_009486_140 Hb_002006_030--Hb_009486_140 Hb_002660_010 Hb_002660_010 Hb_002006_030--Hb_002660_010 Hb_002218_090 Hb_002218_090 Hb_002006_030--Hb_002218_090 Hb_000684_470 Hb_000684_470 Hb_002006_030--Hb_000684_470 Hb_001862_210 Hb_001862_210 Hb_002006_030--Hb_001862_210 Hb_070256_010 Hb_070256_010 Hb_002006_030--Hb_070256_010 Hb_002518_260 Hb_002518_260 Hb_009486_140--Hb_002518_260 Hb_000041_110 Hb_000041_110 Hb_009486_140--Hb_000041_110 Hb_000329_710 Hb_000329_710 Hb_009486_140--Hb_000329_710 Hb_011386_010 Hb_011386_010 Hb_009486_140--Hb_011386_010 Hb_156279_020 Hb_156279_020 Hb_009486_140--Hb_156279_020 Hb_005054_110 Hb_005054_110 Hb_009486_140--Hb_005054_110 Hb_000227_120 Hb_000227_120 Hb_002660_010--Hb_000227_120 Hb_005348_140 Hb_005348_140 Hb_002660_010--Hb_005348_140 Hb_001318_270 Hb_001318_270 Hb_002660_010--Hb_001318_270 Hb_002391_310 Hb_002391_310 Hb_002660_010--Hb_002391_310 Hb_002660_010--Hb_009486_140 Hb_007426_110 Hb_007426_110 Hb_002218_090--Hb_007426_110 Hb_000343_250 Hb_000343_250 Hb_002218_090--Hb_000343_250 Hb_007765_100 Hb_007765_100 Hb_002218_090--Hb_007765_100 Hb_000329_370 Hb_000329_370 Hb_002218_090--Hb_000329_370 Hb_006483_110 Hb_006483_110 Hb_002218_090--Hb_006483_110 Hb_005867_070 Hb_005867_070 Hb_002218_090--Hb_005867_070 Hb_005116_160 Hb_005116_160 Hb_000684_470--Hb_005116_160 Hb_005779_060 Hb_005779_060 Hb_000684_470--Hb_005779_060 Hb_000684_470--Hb_156279_020 Hb_002046_180 Hb_002046_180 Hb_000684_470--Hb_002046_180 Hb_005463_100 Hb_005463_100 Hb_000684_470--Hb_005463_100 Hb_009767_110 Hb_009767_110 Hb_000684_470--Hb_009767_110 Hb_001723_020 Hb_001723_020 Hb_001862_210--Hb_001723_020 Hb_002890_290 Hb_002890_290 Hb_001862_210--Hb_002890_290 Hb_000340_400 Hb_000340_400 Hb_001862_210--Hb_000340_400 Hb_142368_010 Hb_142368_010 Hb_001862_210--Hb_142368_010 Hb_004837_180 Hb_004837_180 Hb_001862_210--Hb_004837_180 Hb_000069_380 Hb_000069_380 Hb_001862_210--Hb_000069_380 Hb_003688_150 Hb_003688_150 Hb_070256_010--Hb_003688_150 Hb_003020_220 Hb_003020_220 Hb_070256_010--Hb_003020_220 Hb_000603_110 Hb_000603_110 Hb_070256_010--Hb_000603_110 Hb_009382_010 Hb_009382_010 Hb_070256_010--Hb_009382_010 Hb_070256_010--Hb_002660_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.60048 3.97624 4.70625 2.1738 2.7977 3.87155
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.09628 4.36286 5.64981 4.87545 5.07023

CAGE analysis