Hb_002006_090

Information

Type -
Description -
Location Contig2006: 82069-83875
Sequence    

Annotation

kegg
ID tcc:TCM_014769
description Tetratricopeptide repeat (TPR)-like superfamily protein isoform 2
nr
ID XP_012090571.1
description PREDICTED: pentatricopeptide repeat-containing protein At5g50990 [Jatropha curcas]
swissprot
ID Q9FI49
description Pentatricopeptide repeat-containing protein At5g50990 OS=Arabidopsis thaliana GN=PCMP-H59 PE=2 SV=2
trembl
ID A0A067JFA1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26358 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20339: 81160-83888
cDNA
(Sanger)
(ID:Location)		 040_L07.ab1: 82982-83888

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002006_090 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At5g50990 [Jatropha curcas]
2 Hb_001329_300 0.0593307948 - - PREDICTED: L-cysteine desulfhydrase [Jatropha curcas]
3 Hb_000614_230 0.0614855588 - - PREDICTED: F-box protein SKIP14 [Jatropha curcas]
4 Hb_008695_210 0.0674385146 - - PREDICTED: serine hydroxymethyltransferase 7 [Jatropha curcas]
5 Hb_000001_140 0.0709813884 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 12 isoform X1 [Jatropha curcas]
6 Hb_001085_170 0.0741818012 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 2 isoform X1 [Jatropha curcas]
7 Hb_006915_050 0.0824320486 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 6-like isoform X1 [Jatropha curcas]
8 Hb_006922_030 0.082950835 - - ubiquitin, putative [Ricinus communis]
9 Hb_163145_020 0.0864831445 - - PREDICTED: protein phosphatase 2C 29 [Jatropha curcas]
10 Hb_000343_130 0.086574846 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor ASIL1-like [Jatropha curcas]
11 Hb_001051_100 0.0869503177 transcription factor TF Family: ARF Auxin response factor, putative [Ricinus communis]
12 Hb_000111_360 0.0878591435 - - conserved hypothetical protein [Ricinus communis]
13 Hb_004738_040 0.0882080529 - - PREDICTED: serine/threonine-protein kinase EDR1-like isoform X2 [Populus euphratica]
14 Hb_000110_160 0.0890751304 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000567_260 0.0917062486 - - BnaA09g41440D [Brassica napus]
16 Hb_001248_130 0.0928173797 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 69 isoform X1 [Jatropha curcas]
17 Hb_000907_080 0.0931286464 - - PREDICTED: uncharacterized protein LOC105640819 [Jatropha curcas]
18 Hb_006647_020 0.0940649053 transcription factor TF Family: C2H2 PREDICTED: protein indeterminate-domain 2-like [Jatropha curcas]
19 Hb_001277_330 0.0941216899 - - PREDICTED: transmembrane emp24 domain-containing protein p24beta3 [Jatropha curcas]
20 Hb_003787_020 0.0947414788 - - PREDICTED: replication protein A 70 kDa DNA-binding subunit A [Jatropha curcas]

Gene co-expression network

sample Hb_002006_090 Hb_002006_090 Hb_001329_300 Hb_001329_300 Hb_002006_090--Hb_001329_300 Hb_000614_230 Hb_000614_230 Hb_002006_090--Hb_000614_230 Hb_008695_210 Hb_008695_210 Hb_002006_090--Hb_008695_210 Hb_000001_140 Hb_000001_140 Hb_002006_090--Hb_000001_140 Hb_001085_170 Hb_001085_170 Hb_002006_090--Hb_001085_170 Hb_006915_050 Hb_006915_050 Hb_002006_090--Hb_006915_050 Hb_000110_160 Hb_000110_160 Hb_001329_300--Hb_000110_160 Hb_000567_260 Hb_000567_260 Hb_001329_300--Hb_000567_260 Hb_001329_300--Hb_000614_230 Hb_008066_010 Hb_008066_010 Hb_001329_300--Hb_008066_010 Hb_001329_300--Hb_008695_210 Hb_000614_230--Hb_008695_210 Hb_000614_230--Hb_000567_260 Hb_003266_130 Hb_003266_130 Hb_000614_230--Hb_003266_130 Hb_000614_230--Hb_001085_170 Hb_008695_210--Hb_006915_050 Hb_000907_080 Hb_000907_080 Hb_008695_210--Hb_000907_080 Hb_189003_080 Hb_189003_080 Hb_008695_210--Hb_189003_080 Hb_000754_040 Hb_000754_040 Hb_008695_210--Hb_000754_040 Hb_000001_140--Hb_000907_080 Hb_000001_140--Hb_001329_300 Hb_001051_100 Hb_001051_100 Hb_000001_140--Hb_001051_100 Hb_000001_140--Hb_008695_210 Hb_163145_020 Hb_163145_020 Hb_000001_140--Hb_163145_020 Hb_006922_030 Hb_006922_030 Hb_001085_170--Hb_006922_030 Hb_007558_140 Hb_007558_140 Hb_001085_170--Hb_007558_140 Hb_011918_080 Hb_011918_080 Hb_001085_170--Hb_011918_080 Hb_000179_210 Hb_000179_210 Hb_001085_170--Hb_000179_210 Hb_002016_110 Hb_002016_110 Hb_006915_050--Hb_002016_110 Hb_006915_050--Hb_000754_040 Hb_000111_360 Hb_000111_360 Hb_006915_050--Hb_000111_360 Hb_006915_050--Hb_000907_080 Hb_006915_050--Hb_189003_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.73671 1.74393 0.658711 1.57677 2.47032 2.96514
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.76871 2.77174 6.68877 1.68704 1.3547

CAGE analysis