Hb_002006_130

Information

Type -
Description -
Location Contig2006: 106399-114628
Sequence    

Annotation

kegg
ID rcu:RCOM_1503370
description hypothetical protein
nr
ID XP_012090576.1
description PREDICTED: uncharacterized protein LOC105648712 [Jatropha curcas]
swissprot
ID Q9C1W5
description Mitochondrial import inner membrane translocase subunit tim16 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pam16 PE=3 SV=1
trembl
ID E6NU14
description JHL07K02.14 protein OS=Jatropha curcas GN=JHL07K02.14 PE=4 SV=1
Gene Ontology
ID GO:0005744
description PREDICTED: uncharacterized protein LOC105648712

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20342: 110594-114616
cDNA
(Sanger)
(ID:Location)		 009_E12.ab1: 110648-114397

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002006_130 0.0 - - PREDICTED: uncharacterized protein LOC105648712 [Jatropha curcas]
2 Hb_000915_120 0.073312844 - - Peptidylprolyl cis/trans isomerase [Theobroma cacao]
3 Hb_002588_010 0.0824729181 - - PREDICTED: transcription factor BTF3 homolog 4-like [Malus domestica]
4 Hb_007304_070 0.0856134557 - - hypoxanthine-guanine phosphoribosyltransferase, putative [Ricinus communis]
5 Hb_000331_700 0.085690584 - - PREDICTED: uncharacterized protein LOC105640277 [Jatropha curcas]
6 Hb_000093_110 0.08783089 - - PREDICTED: cytochrome b5 isoform A [Jatropha curcas]
7 Hb_000203_020 0.0905292171 - - PREDICTED: 2-aminoethanethiol dioxygenase-like [Jatropha curcas]
8 Hb_000881_080 0.0906469798 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000111_340 0.0909891516 - - peptidyl-prolyl cis-trans isomerase h, ppih, putative [Ricinus communis]
10 Hb_000062_390 0.0945213817 - - PREDICTED: protein Iojap-related, mitochondrial [Jatropha curcas]
11 Hb_026398_010 0.0947548213 - - hypothetical protein B456_010G132100 [Gossypium raimondii]
12 Hb_008921_020 0.0951600773 - - PREDICTED: non-structural maintenance of chromosomes element 1 homolog [Jatropha curcas]
13 Hb_000735_040 0.0974987015 - - 60S ribosomal protein L32A [Hevea brasiliensis]
14 Hb_015807_100 0.097499605 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
15 Hb_000997_120 0.098401972 - - 40S ribosomal protein S15E [Hevea brasiliensis]
16 Hb_000115_230 0.09878452 - - PREDICTED: cysteine--tRNA ligase, cytoplasmic-like [Jatropha curcas]
17 Hb_000948_220 0.0991325646 - - hypothetical protein CICLE_v10013189mg [Citrus clementina]
18 Hb_007120_090 0.1000318642 - - PREDICTED: 60S ribosomal protein L35 [Jatropha curcas]
19 Hb_009476_020 0.100156627 - - tryptophan biosynthesis protein, putative [Ricinus communis]
20 Hb_120823_010 0.1002579106 - - -

Gene co-expression network

sample Hb_002006_130 Hb_002006_130 Hb_000915_120 Hb_000915_120 Hb_002006_130--Hb_000915_120 Hb_002588_010 Hb_002588_010 Hb_002006_130--Hb_002588_010 Hb_007304_070 Hb_007304_070 Hb_002006_130--Hb_007304_070 Hb_000331_700 Hb_000331_700 Hb_002006_130--Hb_000331_700 Hb_000093_110 Hb_000093_110 Hb_002006_130--Hb_000093_110 Hb_000203_020 Hb_000203_020 Hb_002006_130--Hb_000203_020 Hb_000915_120--Hb_000203_020 Hb_002838_030 Hb_002838_030 Hb_000915_120--Hb_002838_030 Hb_000915_120--Hb_002588_010 Hb_006588_080 Hb_006588_080 Hb_000915_120--Hb_006588_080 Hb_000062_390 Hb_000062_390 Hb_000915_120--Hb_000062_390 Hb_000042_260 Hb_000042_260 Hb_002588_010--Hb_000042_260 Hb_011311_010 Hb_011311_010 Hb_002588_010--Hb_011311_010 Hb_002588_010--Hb_000093_110 Hb_019516_100 Hb_019516_100 Hb_002588_010--Hb_019516_100 Hb_007944_040 Hb_007944_040 Hb_002588_010--Hb_007944_040 Hb_000111_340 Hb_000111_340 Hb_002588_010--Hb_000111_340 Hb_007304_070--Hb_000111_340 Hb_003053_030 Hb_003053_030 Hb_007304_070--Hb_003053_030 Hb_000881_080 Hb_000881_080 Hb_007304_070--Hb_000881_080 Hb_001633_030 Hb_001633_030 Hb_007304_070--Hb_001633_030 Hb_002431_050 Hb_002431_050 Hb_007304_070--Hb_002431_050 Hb_000365_080 Hb_000365_080 Hb_007304_070--Hb_000365_080 Hb_003044_090 Hb_003044_090 Hb_000331_700--Hb_003044_090 Hb_002811_080 Hb_002811_080 Hb_000331_700--Hb_002811_080 Hb_000331_700--Hb_002588_010 Hb_000567_410 Hb_000567_410 Hb_000331_700--Hb_000567_410 Hb_000331_700--Hb_011311_010 Hb_007497_030 Hb_007497_030 Hb_000331_700--Hb_007497_030 Hb_000735_040 Hb_000735_040 Hb_000093_110--Hb_000735_040 Hb_006478_160 Hb_006478_160 Hb_000093_110--Hb_006478_160 Hb_000645_140 Hb_000645_140 Hb_000093_110--Hb_000645_140 Hb_000093_110--Hb_000567_410 Hb_174865_010 Hb_174865_010 Hb_000093_110--Hb_174865_010 Hb_012251_010 Hb_012251_010 Hb_000203_020--Hb_012251_010 Hb_007120_090 Hb_007120_090 Hb_000203_020--Hb_007120_090 Hb_000203_020--Hb_000042_260 Hb_000045_250 Hb_000045_250 Hb_000203_020--Hb_000045_250
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.28604 1.64999 1.40997 2.18457 1.36902 1.99337
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.31728 10.8028 2.97205 1.59556 1.24179

CAGE analysis