Hb_002006_140

Information

Type transcription factor
Description TF Family: ERF
Location Contig2006: 119619-121219
Sequence    

Annotation

kegg
ID pop:POPTR_0012s11030g
description POPTRDRAFT_773280; hypothetical protein
nr
ID XP_002318176.2
description hypothetical protein POPTR_0012s11030g [Populus trichocarpa]
swissprot
ID Q9FH54
description Ethylene-responsive transcription factor ERF114 OS=Arabidopsis thaliana GN=ERF114 PE=1 SV=1
trembl
ID B9I411
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0012s11030g PE=4 SV=2
Gene Ontology
ID GO:0003677
description ethylene-responsive transcription factor erf114

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002006_140 0.0 transcription factor TF Family: ERF hypothetical protein POPTR_0012s11030g [Populus trichocarpa]
2 Hb_003428_100 0.1911476886 - - Polygalacturonase precursor, putative [Ricinus communis]
3 Hb_112082_030 0.1919133466 - - PREDICTED: secoisolariciresinol dehydrogenase-like [Jatropha curcas]
4 Hb_001250_140 0.1977507365 - - PREDICTED: cysteine-rich receptor-like protein kinase 2 [Jatropha curcas]
5 Hb_001045_050 0.1981596153 transcription factor TF Family: WRKY hypothetical protein POPTR_0001s33560g [Populus trichocarpa]
6 Hb_002311_240 0.1990364076 - - hypothetical protein JCGZ_18937 [Jatropha curcas]
7 Hb_005389_190 0.2019081727 - - glutamate receptor 2 plant, putative [Ricinus communis]
8 Hb_000300_450 0.2020662868 - - PREDICTED: caffeic acid 3-O-methyltransferase-like isoform X1 [Citrus sinensis]
9 Hb_029510_110 0.2061124108 - - PREDICTED: protein PLANT CADMIUM RESISTANCE 8-like [Jatropha curcas]
10 Hb_004855_050 0.2110133304 - - hypothetical protein POPTR_0016s12140g [Populus trichocarpa]
11 Hb_000189_260 0.2111453633 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000140_160 0.212052762 - - PREDICTED: neurofilament light polypeptide-like [Gossypium raimondii]
13 Hb_000699_170 0.2127915232 - - myosin XI, putative [Ricinus communis]
14 Hb_004800_170 0.2142750346 - - PREDICTED: cytochrome P450 90B1 [Jatropha curcas]
15 Hb_000347_550 0.2143160492 transcription factor TF Family: MYB Duplicated homeodomain-like superfamily protein, putative [Theobroma cacao]
16 Hb_107201_010 0.2143533136 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_26658 [Jatropha curcas]
17 Hb_002057_010 0.2148382868 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
18 Hb_002890_400 0.214952264 - - 2-nitropropane dioxygenase precursor, putative [Ricinus communis]
19 Hb_000748_070 0.2151121915 transcription factor TF Family: WRKY hypothetical protein POPTR_0005s22480g [Populus trichocarpa]
20 Hb_000135_050 0.2160314239 - - PREDICTED: putative leucine-rich repeat receptor-like protein kinase At2g19210-like isoform X2 [Citrus sinensis]

Gene co-expression network

sample Hb_002006_140 Hb_002006_140 Hb_003428_100 Hb_003428_100 Hb_002006_140--Hb_003428_100 Hb_112082_030 Hb_112082_030 Hb_002006_140--Hb_112082_030 Hb_001250_140 Hb_001250_140 Hb_002006_140--Hb_001250_140 Hb_001045_050 Hb_001045_050 Hb_002006_140--Hb_001045_050 Hb_002311_240 Hb_002311_240 Hb_002006_140--Hb_002311_240 Hb_005389_190 Hb_005389_190 Hb_002006_140--Hb_005389_190 Hb_000204_030 Hb_000204_030 Hb_003428_100--Hb_000204_030 Hb_029510_110 Hb_029510_110 Hb_003428_100--Hb_029510_110 Hb_001104_200 Hb_001104_200 Hb_003428_100--Hb_001104_200 Hb_002046_100 Hb_002046_100 Hb_003428_100--Hb_002046_100 Hb_002325_020 Hb_002325_020 Hb_003428_100--Hb_002325_020 Hb_004143_120 Hb_004143_120 Hb_003428_100--Hb_004143_120 Hb_001357_260 Hb_001357_260 Hb_112082_030--Hb_001357_260 Hb_000189_260 Hb_000189_260 Hb_112082_030--Hb_000189_260 Hb_002917_010 Hb_002917_010 Hb_112082_030--Hb_002917_010 Hb_008406_010 Hb_008406_010 Hb_112082_030--Hb_008406_010 Hb_005511_050 Hb_005511_050 Hb_112082_030--Hb_005511_050 Hb_002890_400 Hb_002890_400 Hb_112082_030--Hb_002890_400 Hb_058620_010 Hb_058620_010 Hb_001250_140--Hb_058620_010 Hb_001250_140--Hb_002311_240 Hb_000352_080 Hb_000352_080 Hb_001250_140--Hb_000352_080 Hb_012506_080 Hb_012506_080 Hb_001250_140--Hb_012506_080 Hb_135392_010 Hb_135392_010 Hb_001250_140--Hb_135392_010 Hb_001134_040 Hb_001134_040 Hb_001250_140--Hb_001134_040 Hb_000140_160 Hb_000140_160 Hb_001045_050--Hb_000140_160 Hb_001101_030 Hb_001101_030 Hb_001045_050--Hb_001101_030 Hb_003435_060 Hb_003435_060 Hb_001045_050--Hb_003435_060 Hb_000500_110 Hb_000500_110 Hb_001045_050--Hb_000500_110 Hb_000597_110 Hb_000597_110 Hb_001045_050--Hb_000597_110 Hb_010647_010 Hb_010647_010 Hb_002311_240--Hb_010647_010 Hb_000019_220 Hb_000019_220 Hb_002311_240--Hb_000019_220 Hb_003057_080 Hb_003057_080 Hb_002311_240--Hb_003057_080 Hb_005000_310 Hb_005000_310 Hb_002311_240--Hb_005000_310 Hb_000347_550 Hb_000347_550 Hb_002311_240--Hb_000347_550 Hb_112203_010 Hb_112203_010 Hb_005389_190--Hb_112203_010 Hb_003517_010 Hb_003517_010 Hb_005389_190--Hb_003517_010 Hb_005389_190--Hb_004143_120 Hb_000343_100 Hb_000343_100 Hb_005389_190--Hb_000343_100 Hb_144004_010 Hb_144004_010 Hb_005389_190--Hb_144004_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.929065 0.487599 0.179114 0 0.0154412
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.321042 0.852318 0.176253 9.40669 0.653634

CAGE analysis