Hb_002007_040

Information

Type -
Description -
Location Contig2007: 19563-20530
Sequence    

Annotation

kegg
ID pmum:103344589
description histone H2A.1-like
nr
ID CDP19528.1
description unnamed protein product [Coffea canephora]
swissprot
ID Q94F49
description Probable histone H2A.5 OS=Arabidopsis thaliana GN=At5g27670 PE=1 SV=1
trembl
ID A0A068VIM7
description Histone H2A OS=Coffea canephora GN=GSCOC_T00005157001 PE=3 SV=1
Gene Ontology
ID GO:0000786
description fusion protein of histone 2a and enhanced yellow fluorescence protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20355: 19581-20638
cDNA
(Sanger)
(ID:Location)		 038_D23.ab1: 19586-20531

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002007_040 0.0 - - unnamed protein product [Coffea canephora]
2 Hb_002307_020 0.1012091647 - - PREDICTED: histone H1-like [Jatropha curcas]
3 Hb_000051_080 0.1128328385 - - PREDICTED: DNA (cytosine-5)-methyltransferase CMT3 [Jatropha curcas]
4 Hb_001478_020 0.114252552 desease resistance Gene Name: AAA thyroid hormone receptor interactor, putative [Ricinus communis]
5 Hb_005725_150 0.1256717427 - - PREDICTED: kinesin-related protein 11 isoform X1 [Jatropha curcas]
6 Hb_001501_070 0.1291052425 - - PREDICTED: condensin complex subunit 2 [Jatropha curcas]
7 Hb_003784_040 0.1336320567 - - Afadin- and alpha-actinin-binding protein, putative [Ricinus communis]
8 Hb_010180_030 0.1350175358 - - PREDICTED: WEB family protein At2g38370-like [Jatropha curcas]
9 Hb_001780_080 0.1395998785 - - PREDICTED: tubulin beta-2 chain [Jatropha curcas]
10 Hb_006275_060 0.1435334029 - - hypothetical protein CARUB_v10021660mg, partial [Capsella rubella]
11 Hb_002007_280 0.1436043511 - - PREDICTED: kinesin-like protein KIFC3 [Jatropha curcas]
12 Hb_005504_040 0.1442263557 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000139_280 0.1477025283 - - PREDICTED: mitogen-activated protein kinase kinase kinase NPK1 isoform X1 [Jatropha curcas]
14 Hb_000321_080 0.152361185 - - histone H4 [Zea mays]
15 Hb_000365_210 0.1607991204 - - PREDICTED: cell division control protein 2 homolog C [Jatropha curcas]
16 Hb_011360_130 0.1617316834 - - conserved hypothetical protein [Ricinus communis]
17 Hb_029510_130 0.163074033 - - PREDICTED: malonate--CoA ligase [Jatropha curcas]
18 Hb_002979_030 0.1636568355 - - PREDICTED: serine/threonine-protein kinase Aurora-1 isoform X2 [Jatropha curcas]
19 Hb_038044_010 0.1642815396 - - 12-oxophytodienoate reductase 2 [Theobroma cacao]
20 Hb_000155_150 0.1653393326 - - hypothetical protein CARUB_v10021660mg, partial [Capsella rubella]

Gene co-expression network

sample Hb_002007_040 Hb_002007_040 Hb_002307_020 Hb_002307_020 Hb_002007_040--Hb_002307_020 Hb_000051_080 Hb_000051_080 Hb_002007_040--Hb_000051_080 Hb_001478_020 Hb_001478_020 Hb_002007_040--Hb_001478_020 Hb_005725_150 Hb_005725_150 Hb_002007_040--Hb_005725_150 Hb_001501_070 Hb_001501_070 Hb_002007_040--Hb_001501_070 Hb_003784_040 Hb_003784_040 Hb_002007_040--Hb_003784_040 Hb_006275_060 Hb_006275_060 Hb_002307_020--Hb_006275_060 Hb_002307_020--Hb_000051_080 Hb_002307_020--Hb_003784_040 Hb_000155_150 Hb_000155_150 Hb_002307_020--Hb_000155_150 Hb_001780_080 Hb_001780_080 Hb_002307_020--Hb_001780_080 Hb_000051_080--Hb_005725_150 Hb_000051_080--Hb_003784_040 Hb_000051_080--Hb_006275_060 Hb_010180_030 Hb_010180_030 Hb_000051_080--Hb_010180_030 Hb_001478_020--Hb_010180_030 Hb_001478_020--Hb_001501_070 Hb_038044_010 Hb_038044_010 Hb_001478_020--Hb_038044_010 Hb_001478_020--Hb_001780_080 Hb_001478_020--Hb_003784_040 Hb_029510_130 Hb_029510_130 Hb_001478_020--Hb_029510_130 Hb_005725_150--Hb_003784_040 Hb_005725_150--Hb_010180_030 Hb_005725_150--Hb_001478_020 Hb_005725_150--Hb_006275_060 Hb_001501_070--Hb_038044_010 Hb_001501_070--Hb_010180_030 Hb_000365_210 Hb_000365_210 Hb_001501_070--Hb_000365_210 Hb_001501_070--Hb_029510_130 Hb_024973_020 Hb_024973_020 Hb_001501_070--Hb_024973_020 Hb_005504_040 Hb_005504_040 Hb_003784_040--Hb_005504_040 Hb_003784_040--Hb_010180_030 Hb_000139_280 Hb_000139_280 Hb_003784_040--Hb_000139_280 Hb_003784_040--Hb_001780_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
19.4373 9.41951 468.62 118.866 4.42748 4.86728
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
47.7259 38.5586 17.1401 31.2403 25.6692

CAGE analysis