Hb_002007_050

Information

Type -
Description -
Location Contig2007: 21012-24433
Sequence    

Annotation

kegg
ID tcc:TCM_026639
description Protease Do-like 14, putative isoform 1
nr
ID XP_012089022.1
description PREDICTED: putative protease Do-like 14 [Jatropha curcas]
swissprot
ID Q3E6S8
description Putative protease Do-like 14 OS=Arabidopsis thaliana GN=DEGP14 PE=3 SV=2
trembl
ID A0A067JKY4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23321 PE=4 SV=1
Gene Ontology
ID GO:0004252
description protease do-like 14

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20355: 19581-20638 , PASA_asmbl_20356: 20730-21006 , PASA_asmbl_20357: 21166-21620 , PASA_asmbl_20358: 21797-22144 , PASA_asmbl_20359: 22663-23198 , PASA_asmbl_20360: 23370-23783
cDNA
(Sanger)
(ID:Location)		 038_D23.ab1: 19586-20531

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002007_050 0.0 - - PREDICTED: putative protease Do-like 14 [Jatropha curcas]
2 Hb_148930_010 0.1053482286 - - PREDICTED: uncharacterized protein LOC105648400 [Jatropha curcas]
3 Hb_003376_130 0.1098167059 transcription factor TF Family: S1Fa-like DNA-binding protein S1FA, putative [Ricinus communis]
4 Hb_003086_100 0.112569097 - - hypothetical protein JCGZ_08729 [Jatropha curcas]
5 Hb_012265_010 0.1136120436 - - hypothetical protein CISIN_1g026883mg [Citrus sinensis]
6 Hb_005701_020 0.1138644046 transcription factor TF Family: Orphans PREDICTED: B-box zinc finger protein 21 [Jatropha curcas]
7 Hb_001123_120 0.114702926 - - Uncharacterized protein TCM_042776 [Theobroma cacao]
8 Hb_034585_040 0.1196015151 - - PREDICTED: nuclear pore complex protein NUP58 [Jatropha curcas]
9 Hb_000261_460 0.1223470735 - - 60S ribosomal protein L13aA [Hevea brasiliensis]
10 Hb_000363_200 0.1251634833 - - 40S ribosomal protein S8, putative [Ricinus communis]
11 Hb_001545_060 0.125497696 - - PREDICTED: uncharacterized protein LOC105643880 [Jatropha curcas]
12 Hb_000111_280 0.1266646318 - - diphosphoinositol polyphosphate phosphohydrolase, putative [Ricinus communis]
13 Hb_000085_330 0.1269284167 - - PREDICTED: 40S ribosomal protein S8 [Jatropha curcas]
14 Hb_003680_070 0.1282290019 - - PREDICTED: protein CHUP1, chloroplastic [Jatropha curcas]
15 Hb_000865_070 0.1286681021 - - Protein FAR1-RELATED SEQUENCE 3 [Glycine soja]
16 Hb_000051_040 0.129224769 - - PREDICTED: uncharacterized protein LOC102597788 [Solanum tuberosum]
17 Hb_000648_060 0.130077057 - - hypothetical protein POPTR_0019s10570g [Populus trichocarpa]
18 Hb_000193_200 0.1303433166 - - rotamase, putative [Ricinus communis]
19 Hb_017862_010 0.1304892738 - - PREDICTED: signal recognition particle 19 kDa protein-like [Jatropha curcas]
20 Hb_000567_170 0.1315063434 - - PREDICTED: putative lipase YDR444W isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_002007_050 Hb_002007_050 Hb_148930_010 Hb_148930_010 Hb_002007_050--Hb_148930_010 Hb_003376_130 Hb_003376_130 Hb_002007_050--Hb_003376_130 Hb_003086_100 Hb_003086_100 Hb_002007_050--Hb_003086_100 Hb_012265_010 Hb_012265_010 Hb_002007_050--Hb_012265_010 Hb_005701_020 Hb_005701_020 Hb_002007_050--Hb_005701_020 Hb_001123_120 Hb_001123_120 Hb_002007_050--Hb_001123_120 Hb_002835_320 Hb_002835_320 Hb_148930_010--Hb_002835_320 Hb_001433_050 Hb_001433_050 Hb_148930_010--Hb_001433_050 Hb_001248_080 Hb_001248_080 Hb_148930_010--Hb_001248_080 Hb_148930_010--Hb_003376_130 Hb_148200_010 Hb_148200_010 Hb_148930_010--Hb_148200_010 Hb_003398_120 Hb_003398_120 Hb_148930_010--Hb_003398_120 Hb_000329_330 Hb_000329_330 Hb_003376_130--Hb_000329_330 Hb_000212_260 Hb_000212_260 Hb_003376_130--Hb_000212_260 Hb_003376_130--Hb_003086_100 Hb_003376_130--Hb_148200_010 Hb_002571_020 Hb_002571_020 Hb_003376_130--Hb_002571_020 Hb_003086_100--Hb_012265_010 Hb_003086_100--Hb_001433_050 Hb_001383_060 Hb_001383_060 Hb_003086_100--Hb_001383_060 Hb_002311_320 Hb_002311_320 Hb_003086_100--Hb_002311_320 Hb_010883_150 Hb_010883_150 Hb_003086_100--Hb_010883_150 Hb_012265_010--Hb_001433_050 Hb_130291_010 Hb_130291_010 Hb_012265_010--Hb_130291_010 Hb_012265_010--Hb_148930_010 Hb_012265_010--Hb_002835_320 Hb_010172_030 Hb_010172_030 Hb_012265_010--Hb_010172_030 Hb_011465_040 Hb_011465_040 Hb_005701_020--Hb_011465_040 Hb_002296_060 Hb_002296_060 Hb_005701_020--Hb_002296_060 Hb_000134_330 Hb_000134_330 Hb_005701_020--Hb_000134_330 Hb_000580_080 Hb_000580_080 Hb_005701_020--Hb_000580_080 Hb_001818_020 Hb_001818_020 Hb_005701_020--Hb_001818_020 Hb_000025_600 Hb_000025_600 Hb_005701_020--Hb_000025_600 Hb_000085_330 Hb_000085_330 Hb_001123_120--Hb_000085_330 Hb_017862_010 Hb_017862_010 Hb_001123_120--Hb_017862_010 Hb_001123_120--Hb_148930_010 Hb_001123_120--Hb_010172_030 Hb_000236_460 Hb_000236_460 Hb_001123_120--Hb_000236_460 Hb_002781_020 Hb_002781_020 Hb_001123_120--Hb_002781_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.34829 0.861214 1.67333 0.622122 6.35253 7.22468
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.5464 21.8679 10.9598 6.30724 0.939141

CAGE analysis