Hb_002007_140

Information

Type transcription factor
Description TF Family: C2H2
Location Contig2007: 83916-87573
Sequence    

Annotation

kegg
ID pop:POPTR_0005s02730g
description hypothetical protein
nr
ID XP_011023656.1
description PREDICTED: zinc finger protein NUTCRACKER-like [Populus euphratica]
swissprot
ID Q9SCQ6
description Protein indeterminate-domain 2 OS=Arabidopsis thaliana GN=IDD2 PE=2 SV=1
trembl
ID B9H586
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s02730g PE=4 SV=2
Gene Ontology
ID GO:0003676
description zinc finger protein nutcracker-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20371: 85922-87301
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002007_140 0.0 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein NUTCRACKER-like [Populus euphratica]
2 Hb_009581_050 0.0767501751 - - hypothetical protein CISIN_1g0025812mg, partial [Citrus sinensis]
3 Hb_003807_020 0.0804200509 - - PREDICTED: subtilisin-like protease SBT2.5 [Jatropha curcas]
4 Hb_012753_200 0.0894766421 - - hypothetical protein JCGZ_20651 [Jatropha curcas]
5 Hb_019229_020 0.0958392521 - - Metalloendoproteinase 1 precursor, putative [Ricinus communis]
6 Hb_017866_020 0.0961023101 transcription factor TF Family: WRKY WRKY transcription factor 40 [Jatropha curcas]
7 Hb_000335_050 0.0970403464 - - PREDICTED: CASP-like protein 4A1 isoform X1 [Jatropha curcas]
8 Hb_000045_180 0.0982170523 - - aquaporin PIP1 [Hevea brasiliensis]
9 Hb_002805_150 0.0993882447 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
10 Hb_000579_180 0.0998028608 transcription factor TF Family: bZIP PREDICTED: ocs element-binding factor 1-like [Jatropha curcas]
11 Hb_001838_010 0.1047247553 - - hypothetical protein POPTR_0005s18380g [Populus trichocarpa]
12 Hb_000255_020 0.1061131033 - - PREDICTED: cysteine-rich receptor-like protein kinase 10 [Jatropha curcas]
13 Hb_001104_280 0.1061789823 - - PREDICTED: UPF0481 protein At3g47200 [Jatropha curcas]
14 Hb_013914_020 0.1069773797 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance RPP13-like protein 4 [Jatropha curcas]
15 Hb_000407_080 0.107054138 - - 1-aminocyclopropane-1-carboxylate oxidase [Hevea brasiliensis]
16 Hb_012807_060 0.1095417088 - - ABC transporter family protein [Hevea brasiliensis]
17 Hb_000000_060 0.1122088059 - - PREDICTED: wall-associated receptor kinase-like 14 [Jatropha curcas]
18 Hb_134017_010 0.1123006875 - - kinase, putative [Ricinus communis]
19 Hb_003430_020 0.1148547929 - - PREDICTED: aldehyde dehydrogenase family 2 member B7, mitochondrial-like [Jatropha curcas]
20 Hb_000589_180 0.117980279 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 9 [Jatropha curcas]

Gene co-expression network

sample Hb_002007_140 Hb_002007_140 Hb_009581_050 Hb_009581_050 Hb_002007_140--Hb_009581_050 Hb_003807_020 Hb_003807_020 Hb_002007_140--Hb_003807_020 Hb_012753_200 Hb_012753_200 Hb_002007_140--Hb_012753_200 Hb_019229_020 Hb_019229_020 Hb_002007_140--Hb_019229_020 Hb_017866_020 Hb_017866_020 Hb_002007_140--Hb_017866_020 Hb_000335_050 Hb_000335_050 Hb_002007_140--Hb_000335_050 Hb_000407_080 Hb_000407_080 Hb_009581_050--Hb_000407_080 Hb_012807_060 Hb_012807_060 Hb_009581_050--Hb_012807_060 Hb_009581_050--Hb_003807_020 Hb_009581_050--Hb_000335_050 Hb_003430_020 Hb_003430_020 Hb_009581_050--Hb_003430_020 Hb_003807_020--Hb_000335_050 Hb_000579_180 Hb_000579_180 Hb_003807_020--Hb_000579_180 Hb_004447_020 Hb_004447_020 Hb_003807_020--Hb_004447_020 Hb_002391_350 Hb_002391_350 Hb_003807_020--Hb_002391_350 Hb_002805_150 Hb_002805_150 Hb_012753_200--Hb_002805_150 Hb_012753_200--Hb_000579_180 Hb_012753_200--Hb_003807_020 Hb_012395_070 Hb_012395_070 Hb_012753_200--Hb_012395_070 Hb_001514_210 Hb_001514_210 Hb_012753_200--Hb_001514_210 Hb_001638_110 Hb_001638_110 Hb_019229_020--Hb_001638_110 Hb_000616_050 Hb_000616_050 Hb_019229_020--Hb_000616_050 Hb_001104_280 Hb_001104_280 Hb_019229_020--Hb_001104_280 Hb_000649_030 Hb_000649_030 Hb_019229_020--Hb_000649_030 Hb_000000_060 Hb_000000_060 Hb_019229_020--Hb_000000_060 Hb_000237_150 Hb_000237_150 Hb_019229_020--Hb_000237_150 Hb_000077_460 Hb_000077_460 Hb_017866_020--Hb_000077_460 Hb_002003_020 Hb_002003_020 Hb_017866_020--Hb_002003_020 Hb_013914_020 Hb_013914_020 Hb_017866_020--Hb_013914_020 Hb_000045_180 Hb_000045_180 Hb_017866_020--Hb_000045_180 Hb_001283_010 Hb_001283_010 Hb_017866_020--Hb_001283_010 Hb_010926_010 Hb_010926_010 Hb_000335_050--Hb_010926_010 Hb_000335_050--Hb_002391_350 Hb_000335_050--Hb_000579_180 Hb_000335_050--Hb_004447_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.00888252 12.952 1.47112 4.69544 0.0266809 0.0486544
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0201738 0 0 15.5847 1.41297

CAGE analysis