Hb_002007_150

Information

Type -
Description -
Location Contig2007: 96830-97447
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20373: 97801-98092 , PASA_asmbl_20374: 98110-98520
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002007_150 0.0 - - -
2 Hb_003849_110 0.0677205088 - - hypothetical protein JCGZ_17842 [Jatropha curcas]
3 Hb_000521_330 0.0692830839 - - conserved hypothetical protein [Ricinus communis]
4 Hb_003906_200 0.0748293761 - - PREDICTED: zinc finger CCCH domain-containing protein 48 [Jatropha curcas]
5 Hb_003464_090 0.0781344098 transcription factor TF Family: Trihelix PREDICTED: uncharacterized protein LOC105642342 [Jatropha curcas]
6 Hb_000347_250 0.07967277 - - PREDICTED: uncharacterized protein LOC105133971 [Populus euphratica]
7 Hb_000868_090 0.0818042578 transcription factor TF Family: ARID PREDICTED: AT-rich interactive domain-containing protein 4 [Jatropha curcas]
8 Hb_001396_200 0.0819332357 transcription factor TF Family: CAMTA PREDICTED: calmodulin-binding transcription activator 4 isoform X1 [Jatropha curcas]
9 Hb_001359_050 0.0829584073 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000738_020 0.0839261743 - - zinc finger protein, putative [Ricinus communis]
11 Hb_019863_070 0.0843494254 - - PREDICTED: regulatory-associated protein of TOR 1 isoform X1 [Jatropha curcas]
12 Hb_007035_050 0.0891166285 - - PREDICTED: cleavage stimulating factor 64 [Jatropha curcas]
13 Hb_006059_040 0.0893098826 transcription factor TF Family: SOH1 hypothetical protein PHAVU_007G063000g [Phaseolus vulgaris]
14 Hb_000069_310 0.0895793851 - - ubiquitin ligase [Cucumis melo subsp. melo]
15 Hb_000029_060 0.0902825337 - - PREDICTED: mRNA-decapping enzyme-like protein [Jatropha curcas]
16 Hb_062226_130 0.0914189685 - - PREDICTED: serine/threonine-protein phosphatase PP1 isozyme 4 [Jatropha curcas]
17 Hb_001221_110 0.0916703068 transcription factor TF Family: SWI/SNF-BAF60b hypothetical protein JCGZ_11303 [Jatropha curcas]
18 Hb_112198_010 0.0923285607 - - PREDICTED: F-box protein SKIP22 [Jatropha curcas]
19 Hb_007017_040 0.0925822022 - - PREDICTED: serine/threonine-protein phosphatase PP2A catalytic subunit [Jatropha curcas]
20 Hb_000484_130 0.0928047517 - - splicing factor, putative [Ricinus communis]

Gene co-expression network

sample Hb_002007_150 Hb_002007_150 Hb_003849_110 Hb_003849_110 Hb_002007_150--Hb_003849_110 Hb_000521_330 Hb_000521_330 Hb_002007_150--Hb_000521_330 Hb_003906_200 Hb_003906_200 Hb_002007_150--Hb_003906_200 Hb_003464_090 Hb_003464_090 Hb_002007_150--Hb_003464_090 Hb_000347_250 Hb_000347_250 Hb_002007_150--Hb_000347_250 Hb_000868_090 Hb_000868_090 Hb_002007_150--Hb_000868_090 Hb_003849_110--Hb_003464_090 Hb_003428_010 Hb_003428_010 Hb_003849_110--Hb_003428_010 Hb_019863_070 Hb_019863_070 Hb_003849_110--Hb_019863_070 Hb_000029_060 Hb_000029_060 Hb_003849_110--Hb_000029_060 Hb_004916_010 Hb_004916_010 Hb_003849_110--Hb_004916_010 Hb_002818_030 Hb_002818_030 Hb_003849_110--Hb_002818_030 Hb_002492_010 Hb_002492_010 Hb_000521_330--Hb_002492_010 Hb_004143_100 Hb_004143_100 Hb_000521_330--Hb_004143_100 Hb_000189_600 Hb_000189_600 Hb_000521_330--Hb_000189_600 Hb_000089_180 Hb_000089_180 Hb_000521_330--Hb_000089_180 Hb_000521_330--Hb_000029_060 Hb_000521_330--Hb_003906_200 Hb_112198_010 Hb_112198_010 Hb_003906_200--Hb_112198_010 Hb_003906_200--Hb_002492_010 Hb_003906_200--Hb_004143_100 Hb_001473_160 Hb_001473_160 Hb_003906_200--Hb_001473_160 Hb_000072_120 Hb_000072_120 Hb_003906_200--Hb_000072_120 Hb_003544_060 Hb_003544_060 Hb_003906_200--Hb_003544_060 Hb_007163_120 Hb_007163_120 Hb_003464_090--Hb_007163_120 Hb_001359_050 Hb_001359_050 Hb_003464_090--Hb_001359_050 Hb_001408_140 Hb_001408_140 Hb_003464_090--Hb_001408_140 Hb_005653_090 Hb_005653_090 Hb_003464_090--Hb_005653_090 Hb_007765_110 Hb_007765_110 Hb_003464_090--Hb_007765_110 Hb_000292_100 Hb_000292_100 Hb_000347_250--Hb_000292_100 Hb_007472_070 Hb_007472_070 Hb_000347_250--Hb_007472_070 Hb_062226_130 Hb_062226_130 Hb_000347_250--Hb_062226_130 Hb_012022_040 Hb_012022_040 Hb_000347_250--Hb_012022_040 Hb_002849_130 Hb_002849_130 Hb_000347_250--Hb_002849_130 Hb_001259_050 Hb_001259_050 Hb_000347_250--Hb_001259_050 Hb_000868_090--Hb_007765_110 Hb_000868_090--Hb_019863_070 Hb_000868_090--Hb_002818_030 Hb_000868_090--Hb_003464_090 Hb_000318_250 Hb_000318_250 Hb_000868_090--Hb_000318_250 Hb_000868_090--Hb_003906_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.72629 2.62859 1.41087 1.97197 1.15379 0.918389
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.66506 2.05576 1.45117 1.88028 1.58936

CAGE analysis