Hb_002007_180

Information

Type -
Description -
Location Contig2007: 120126-120509
Sequence    

Annotation

kegg
ID rcu:RCOM_1432340
description hypothetical protein
nr
ID XP_012089038.1
description PREDICTED: uncharacterized protein LOC105647525 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9RF85
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1432340 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002007_180 0.0 - - PREDICTED: uncharacterized protein LOC105647525 [Jatropha curcas]
2 Hb_140291_010 0.1029058819 - - hypothetical protein JCGZ_17222 [Jatropha curcas]
3 Hb_005260_020 0.1143794906 - - PREDICTED: uncharacterized protein LOC105633789 [Jatropha curcas]
4 Hb_002737_070 0.1161991266 - - PREDICTED: phagocyte signaling-impaired protein [Jatropha curcas]
5 Hb_000812_040 0.1167360477 - - zinc finger family protein [Populus trichocarpa]
6 Hb_005714_130 0.1168205456 transcription factor TF Family: C2H2 unknown [Populus trichocarpa x Populus deltoides]
7 Hb_000080_060 0.1178375994 - - RNA polymerase I, II and III subunit RPB8, partial [Manihot esculenta]
8 Hb_096490_020 0.1233068774 - - PREDICTED: UPF0565 protein C2orf69 [Jatropha curcas]
9 Hb_000062_430 0.1246310371 - - PREDICTED: uncharacterized protein LOC105644764 isoform X1 [Jatropha curcas]
10 Hb_007229_070 0.1256492303 - - PREDICTED: UPF0565 protein C2orf69 [Jatropha curcas]
11 Hb_013691_020 0.1256600347 - - transcription initiation factor iie, alpha subunit, putative [Ricinus communis]
12 Hb_001430_120 0.1268836575 - - PREDICTED: DNA polymerase delta subunit 4 [Jatropha curcas]
13 Hb_020665_040 0.1274145407 transcription factor TF Family: Jumonji PREDICTED: trichohyalin-like [Malus domestica]
14 Hb_012799_130 0.1274825188 - - PREDICTED: flap endonuclease GEN-like 2 [Jatropha curcas]
15 Hb_144598_030 0.1280701276 - - PREDICTED: mitotic apparatus protein p62 [Jatropha curcas]
16 Hb_184570_010 0.1294550836 - - PREDICTED: COP9 signalosome complex subunit 8 [Jatropha curcas]
17 Hb_004934_070 0.1311901965 - - PREDICTED: U2 small nuclear ribonucleoprotein A' [Jatropha curcas]
18 Hb_001358_030 0.1324357727 - - PREDICTED: 40S ribosomal protein S3-3-like [Populus euphratica]
19 Hb_012008_020 0.1324411384 - - PREDICTED: uncharacterized protein LOC104233229 [Nicotiana sylvestris]
20 Hb_008643_040 0.1327745257 - - PREDICTED: jacalin-related lectin 3-like [Jatropha curcas]

Gene co-expression network

sample Hb_002007_180 Hb_002007_180 Hb_140291_010 Hb_140291_010 Hb_002007_180--Hb_140291_010 Hb_005260_020 Hb_005260_020 Hb_002007_180--Hb_005260_020 Hb_002737_070 Hb_002737_070 Hb_002007_180--Hb_002737_070 Hb_000812_040 Hb_000812_040 Hb_002007_180--Hb_000812_040 Hb_005714_130 Hb_005714_130 Hb_002007_180--Hb_005714_130 Hb_000080_060 Hb_000080_060 Hb_002007_180--Hb_000080_060 Hb_096490_020 Hb_096490_020 Hb_140291_010--Hb_096490_020 Hb_041392_010 Hb_041392_010 Hb_140291_010--Hb_041392_010 Hb_000416_070 Hb_000416_070 Hb_140291_010--Hb_000416_070 Hb_140291_010--Hb_000812_040 Hb_003656_140 Hb_003656_140 Hb_140291_010--Hb_003656_140 Hb_001430_120 Hb_001430_120 Hb_005260_020--Hb_001430_120 Hb_005333_070 Hb_005333_070 Hb_005260_020--Hb_005333_070 Hb_027295_010 Hb_027295_010 Hb_005260_020--Hb_027295_010 Hb_000205_160 Hb_000205_160 Hb_005260_020--Hb_000205_160 Hb_001489_150 Hb_001489_150 Hb_005260_020--Hb_001489_150 Hb_001358_030 Hb_001358_030 Hb_005260_020--Hb_001358_030 Hb_000062_430 Hb_000062_430 Hb_002737_070--Hb_000062_430 Hb_000120_920 Hb_000120_920 Hb_002737_070--Hb_000120_920 Hb_165928_020 Hb_165928_020 Hb_002737_070--Hb_165928_020 Hb_013691_020 Hb_013691_020 Hb_002737_070--Hb_013691_020 Hb_000009_650 Hb_000009_650 Hb_002737_070--Hb_000009_650 Hb_000785_080 Hb_000785_080 Hb_002737_070--Hb_000785_080 Hb_032927_010 Hb_032927_010 Hb_000812_040--Hb_032927_010 Hb_067776_010 Hb_067776_010 Hb_000812_040--Hb_067776_010 Hb_152554_010 Hb_152554_010 Hb_000812_040--Hb_152554_010 Hb_006502_080 Hb_006502_080 Hb_000812_040--Hb_006502_080 Hb_022250_130 Hb_022250_130 Hb_000812_040--Hb_022250_130 Hb_010565_010 Hb_010565_010 Hb_005714_130--Hb_010565_010 Hb_001767_120 Hb_001767_120 Hb_005714_130--Hb_001767_120 Hb_005714_130--Hb_041392_010 Hb_005367_010 Hb_005367_010 Hb_005714_130--Hb_005367_010 Hb_128998_010 Hb_128998_010 Hb_005714_130--Hb_128998_010 Hb_004545_060 Hb_004545_060 Hb_000080_060--Hb_004545_060 Hb_010180_010 Hb_010180_010 Hb_000080_060--Hb_010180_010 Hb_004944_010 Hb_004944_010 Hb_000080_060--Hb_004944_010 Hb_143398_010 Hb_143398_010 Hb_000080_060--Hb_143398_010 Hb_012008_020 Hb_012008_020 Hb_000080_060--Hb_012008_020 Hb_000045_090 Hb_000045_090 Hb_000080_060--Hb_000045_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.1228 8.90819 8.48949 11.9125 10.1556 34.8001
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.8721 20.8572 5.43066 8.37806 5.06485

CAGE analysis