Hb_002007_200

Information

Type -
Description -
Location Contig2007: 130887-131902
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID GO:0031625
description cullin-1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002007_200 0.0 - - -
2 Hb_011512_120 0.163219515 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 1 [Jatropha curcas]
3 Hb_088753_010 0.1649084757 - - PREDICTED: copper amine oxidase 1-like [Vitis vinifera]
4 Hb_000904_080 0.1658207794 - - alpha-amylase-like protein [Vitis labrusca x Vitis vinifera]
5 Hb_004880_140 0.1706177253 transcription factor TF Family: Orphans PREDICTED: zinc finger protein CONSTANS-LIKE 1 [Jatropha curcas]
6 Hb_001437_080 0.1781040575 transcription factor TF Family: TCP hypothetical protein JCGZ_05472 [Jatropha curcas]
7 Hb_002572_050 0.1796302188 transcription factor TF Family: PLATZ protein with unknown function [Ricinus communis]
8 Hb_001638_080 0.1822345501 - - PREDICTED: uncharacterized protein LOC105642789 [Jatropha curcas]
9 Hb_002097_200 0.1823588635 - - protein phosphatase 2a, regulatory subunit, putative [Ricinus communis]
10 Hb_000111_180 0.184634028 - - PREDICTED: U-box domain-containing protein 4 [Jatropha curcas]
11 Hb_002272_080 0.1852737537 - - -
12 Hb_000215_350 0.1861851551 - - PREDICTED: uncharacterized protein LOC104901272 [Beta vulgaris subsp. vulgaris]
13 Hb_189208_020 0.1906402794 - - LRX2, putative [Ricinus communis]
14 Hb_002546_020 0.1926628583 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD1-1 [Malus domestica]
15 Hb_028487_020 0.1929947732 - - hypothetical protein POPTR_0010s11880g [Populus trichocarpa]
16 Hb_000009_180 0.1954873872 rubber biosynthesis Gene Name: Geranyl geranyl diphosphate synthase RecName: Full=Geranylgeranyl pyrophosphate synthase, chloroplastic; Short=GGPP synthase; Short=GGPS; AltName: Full=(2E,6E)-farnesyl diphosphate synthase; AltName: Full=Dimethylallyltranstransferase; AltName: Full=Farnesyl diphosphate synthase; AltName: Full=Farnesyltranstransferase; AltName: Full=Geranyltranstransferase; Flags: Precursor [Hevea brasiliensis]
17 Hb_001817_160 0.1986921683 - - conserved hypothetical protein [Ricinus communis]
18 Hb_069150_010 0.1987056063 desease resistance Gene Name: NB-ARC Disease resistance protein RPM1, putative [Ricinus communis]
19 Hb_000451_070 0.19986124 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
20 Hb_003929_130 0.1998640378 - - PREDICTED: uncharacterized protein LOC105643628 [Jatropha curcas]

Gene co-expression network

sample Hb_002007_200 Hb_002007_200 Hb_011512_120 Hb_011512_120 Hb_002007_200--Hb_011512_120 Hb_088753_010 Hb_088753_010 Hb_002007_200--Hb_088753_010 Hb_000904_080 Hb_000904_080 Hb_002007_200--Hb_000904_080 Hb_004880_140 Hb_004880_140 Hb_002007_200--Hb_004880_140 Hb_001437_080 Hb_001437_080 Hb_002007_200--Hb_001437_080 Hb_002572_050 Hb_002572_050 Hb_002007_200--Hb_002572_050 Hb_001828_130 Hb_001828_130 Hb_011512_120--Hb_001828_130 Hb_000175_220 Hb_000175_220 Hb_011512_120--Hb_000175_220 Hb_000322_150 Hb_000322_150 Hb_011512_120--Hb_000322_150 Hb_002636_100 Hb_002636_100 Hb_011512_120--Hb_002636_100 Hb_005675_040 Hb_005675_040 Hb_011512_120--Hb_005675_040 Hb_000256_140 Hb_000256_140 Hb_011512_120--Hb_000256_140 Hb_000402_210 Hb_000402_210 Hb_088753_010--Hb_000402_210 Hb_002097_200 Hb_002097_200 Hb_088753_010--Hb_002097_200 Hb_000451_070 Hb_000451_070 Hb_088753_010--Hb_000451_070 Hb_189208_020 Hb_189208_020 Hb_088753_010--Hb_189208_020 Hb_006788_140 Hb_006788_140 Hb_088753_010--Hb_006788_140 Hb_000302_260 Hb_000302_260 Hb_088753_010--Hb_000302_260 Hb_000904_080--Hb_004880_140 Hb_000307_190 Hb_000307_190 Hb_000904_080--Hb_000307_190 Hb_007441_110 Hb_007441_110 Hb_000904_080--Hb_007441_110 Hb_000904_080--Hb_011512_120 Hb_004228_030 Hb_004228_030 Hb_000904_080--Hb_004228_030 Hb_000130_240 Hb_000130_240 Hb_000904_080--Hb_000130_240 Hb_004880_140--Hb_007441_110 Hb_004880_140--Hb_004228_030 Hb_004880_140--Hb_001437_080 Hb_002272_020 Hb_002272_020 Hb_004880_140--Hb_002272_020 Hb_004880_140--Hb_000307_190 Hb_000120_330 Hb_000120_330 Hb_001437_080--Hb_000120_330 Hb_005116_060 Hb_005116_060 Hb_001437_080--Hb_005116_060 Hb_002234_100 Hb_002234_100 Hb_001437_080--Hb_002234_100 Hb_001030_020 Hb_001030_020 Hb_001437_080--Hb_001030_020 Hb_000856_380 Hb_000856_380 Hb_001437_080--Hb_000856_380 Hb_005306_190 Hb_005306_190 Hb_001437_080--Hb_005306_190 Hb_000953_050 Hb_000953_050 Hb_002572_050--Hb_000953_050 Hb_005496_180 Hb_005496_180 Hb_002572_050--Hb_005496_180 Hb_001369_570 Hb_001369_570 Hb_002572_050--Hb_001369_570 Hb_001794_060 Hb_001794_060 Hb_002572_050--Hb_001794_060 Hb_000215_350 Hb_000215_350 Hb_002572_050--Hb_000215_350 Hb_008511_100 Hb_008511_100 Hb_002572_050--Hb_008511_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.589174 3.80853 1.05912 0.296971 0.631277 1.3692
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.899723 3.30187 0.70149 1.06938 0.765178

CAGE analysis