Hb_002007_210

Information

Type -
Description -
Location Contig2007: 139190-145416
Sequence    

Annotation

kegg
ID rcu:RCOM_1432000
description AMP-activated protein kinase, gamma regulatory subunit, putative
nr
ID XP_012089045.1
description PREDICTED: sucrose nonfermenting 4-like protein isoform X2 [Jatropha curcas]
swissprot
ID Q944A6
description Sucrose nonfermenting 4-like protein OS=Arabidopsis thaliana GN=SNF4 PE=1 SV=1
trembl
ID A0A067JVD5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23337 PE=4 SV=1
Gene Ontology
ID GO:0004674
description sucrose nonfermenting 4-like protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20379: 139262-145374 , PASA_asmbl_20380: 139804-141706
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002007_210 0.0 - - PREDICTED: sucrose nonfermenting 4-like protein isoform X2 [Jatropha curcas]
2 Hb_015778_010 0.0569963961 - - PREDICTED: AMSH-like ubiquitin thioesterase 1 [Jatropha curcas]
3 Hb_004837_160 0.06779093 - - PREDICTED: heterogeneous nuclear ribonucleoprotein H3 isoform X1 [Jatropha curcas]
4 Hb_010883_050 0.0741834581 - - PREDICTED: oxysterol-binding protein-related protein 1C-like isoform X1 [Jatropha curcas]
5 Hb_152784_010 0.0755030533 - - hypothetical protein PRUPE_ppa010913mg [Prunus persica]
6 Hb_003349_090 0.0783532321 - - PREDICTED: diphthamide biosynthesis protein 2 [Jatropha curcas]
7 Hb_009615_070 0.0790508963 - - type X protein phosphatase-II [Populus trichocarpa]
8 Hb_004889_010 0.0808033998 - - Vacuolar protein sorting-associated protein-like protein [Medicago truncatula]
9 Hb_003697_040 0.08088634 - - hypothetical protein B456_005G209600 [Gossypium raimondii]
10 Hb_000985_060 0.0813916615 - - PREDICTED: protein transport protein SFT2-like isoform X1 [Jatropha curcas]
11 Hb_003502_060 0.0822746465 - - PREDICTED: alpha-1,3/1,6-mannosyltransferase ALG2 [Jatropha curcas]
12 Hb_000805_240 0.0823342755 - - PREDICTED: uncharacterized protein C20orf24 homolog [Jatropha curcas]
13 Hb_000336_240 0.0824421501 transcription factor TF Family: mTERF LOC100285792 [Zea mays]
14 Hb_001222_080 0.082807504 - - PREDICTED: uncharacterized protein LOC105642435 isoform X1 [Jatropha curcas]
15 Hb_000373_130 0.0831747572 - - PREDICTED: protein FAM188A [Jatropha curcas]
16 Hb_089032_030 0.0835302102 - - PREDICTED: 3-isopropylmalate dehydrogenase 2, chloroplastic-like [Jatropha curcas]
17 Hb_000477_060 0.0836364627 - - PREDICTED: serine-threonine kinase receptor-associated protein-like [Jatropha curcas]
18 Hb_006420_080 0.0850898651 rubber biosynthesis Gene Name: Pyruvate dehydrogenase PREDICTED: pyruvate dehydrogenase E1 component subunit alpha-1, mitochondrial isoform X1 [Jatropha curcas]
19 Hb_004696_080 0.0852514818 - - PREDICTED: uncharacterized protein At1g01500-like [Populus euphratica]
20 Hb_076233_040 0.086085995 - - PREDICTED: ATP synthase subunit gamma, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_002007_210 Hb_002007_210 Hb_015778_010 Hb_015778_010 Hb_002007_210--Hb_015778_010 Hb_004837_160 Hb_004837_160 Hb_002007_210--Hb_004837_160 Hb_010883_050 Hb_010883_050 Hb_002007_210--Hb_010883_050 Hb_152784_010 Hb_152784_010 Hb_002007_210--Hb_152784_010 Hb_003349_090 Hb_003349_090 Hb_002007_210--Hb_003349_090 Hb_009615_070 Hb_009615_070 Hb_002007_210--Hb_009615_070 Hb_006420_080 Hb_006420_080 Hb_015778_010--Hb_006420_080 Hb_003502_060 Hb_003502_060 Hb_015778_010--Hb_003502_060 Hb_000414_130 Hb_000414_130 Hb_015778_010--Hb_000414_130 Hb_005306_180 Hb_005306_180 Hb_015778_010--Hb_005306_180 Hb_011344_190 Hb_011344_190 Hb_015778_010--Hb_011344_190 Hb_004837_160--Hb_003349_090 Hb_028515_010 Hb_028515_010 Hb_004837_160--Hb_028515_010 Hb_000373_130 Hb_000373_130 Hb_004837_160--Hb_000373_130 Hb_003697_040 Hb_003697_040 Hb_004837_160--Hb_003697_040 Hb_001222_080 Hb_001222_080 Hb_004837_160--Hb_001222_080 Hb_000436_130 Hb_000436_130 Hb_010883_050--Hb_000436_130 Hb_010883_050--Hb_006420_080 Hb_000336_240 Hb_000336_240 Hb_010883_050--Hb_000336_240 Hb_076233_040 Hb_076233_040 Hb_010883_050--Hb_076233_040 Hb_010883_050--Hb_003697_040 Hb_000638_250 Hb_000638_250 Hb_152784_010--Hb_000638_250 Hb_000317_390 Hb_000317_390 Hb_152784_010--Hb_000317_390 Hb_001318_250 Hb_001318_250 Hb_152784_010--Hb_001318_250 Hb_033594_150 Hb_033594_150 Hb_152784_010--Hb_033594_150 Hb_000103_320 Hb_000103_320 Hb_152784_010--Hb_000103_320 Hb_004696_080 Hb_004696_080 Hb_152784_010--Hb_004696_080 Hb_010812_120 Hb_010812_120 Hb_003349_090--Hb_010812_120 Hb_003349_090--Hb_028515_010 Hb_003349_090--Hb_000373_130 Hb_004889_010 Hb_004889_010 Hb_003349_090--Hb_004889_010 Hb_089032_030 Hb_089032_030 Hb_003349_090--Hb_089032_030 Hb_023278_020 Hb_023278_020 Hb_009615_070--Hb_023278_020 Hb_003605_090 Hb_003605_090 Hb_009615_070--Hb_003605_090 Hb_007009_010 Hb_007009_010 Hb_009615_070--Hb_007009_010 Hb_009615_070--Hb_004889_010 Hb_004899_370 Hb_004899_370 Hb_009615_070--Hb_004899_370 Hb_009615_070--Hb_089032_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.90017 9.53665 10.4916 22.6785 7.55246 14.5034
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
26.5407 26.6137 27.6729 12.673 11.7546

CAGE analysis