Hb_002007_220

Information

Type -
Description -
Location Contig2007: 145968-147092
Sequence    

Annotation

kegg
ID pop:POPTR_0009s14260g
description POPTRDRAFT_557028; chaos family protein
nr
ID XP_012089050.1
description PREDICTED: signal recognition particle 43 kDa protein, chloroplastic [Jatropha curcas]
swissprot
ID O22265
description Signal recognition particle 43 kDa protein, chloroplastic OS=Arabidopsis thaliana GN=CAO PE=1 SV=2
trembl
ID B9HR05
description Chaos family protein OS=Populus trichocarpa GN=POPTR_0009s14260g PE=4 SV=2
Gene Ontology
ID GO:0009507
description signal recognition particle 43 kda chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 050_P19.ab1: 146496-147226

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002007_220 0.0 - - PREDICTED: signal recognition particle 43 kDa protein, chloroplastic [Jatropha curcas]
2 Hb_018591_020 0.0596845143 - - Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplast precursor, putative [Ricinus communis]
3 Hb_000155_020 0.0602895916 - - PREDICTED: triose phosphate/phosphate translocator TPT, chloroplastic isoform X1 [Jatropha curcas]
4 Hb_033363_040 0.0654860747 - - PREDICTED: probable galacturonosyltransferase-like 3 [Jatropha curcas]
5 Hb_003494_090 0.0671252467 transcription factor TF Family: MYB myb family transcription factor family protein [Populus trichocarpa]
6 Hb_000270_090 0.0686991871 - - nitrate transporter, putative [Ricinus communis]
7 Hb_001321_010 0.073958946 - - HIGH-CHLOROPHYLL-FLUORESCENCE 101 family protein [Populus trichocarpa]
8 Hb_012395_090 0.0749876718 - - PREDICTED: protein PROTON GRADIENT REGULATION 5, chloroplastic [Jatropha curcas]
9 Hb_001159_050 0.0762891481 - - PREDICTED: uncharacterized protein LOC105645952 [Jatropha curcas]
10 Hb_011013_040 0.0766416338 transcription factor TF Family: C2C2-YABBY unknown [Populus trichocarpa]
11 Hb_004994_030 0.0767010203 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein ANTHOCYANINLESS 2 [Jatropha curcas]
12 Hb_000460_040 0.0781824087 - - PREDICTED: protein phosphatase 2C 57 [Jatropha curcas]
13 Hb_010136_010 0.0798090312 - - Putative receptor-like protein kinase [Glycine soja]
14 Hb_001699_140 0.0832263136 - - PREDICTED: ferredoxin--NADP reductase, leaf isozyme, chloroplastic [Jatropha curcas]
15 Hb_004017_030 0.0851014114 - - PREDICTED: 2-hydroxyisoflavanone dehydratase-like [Jatropha curcas]
16 Hb_001942_010 0.0882584783 - - hypothetical protein JCGZ_20930 [Jatropha curcas]
17 Hb_002852_010 0.0886932524 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
18 Hb_004970_060 0.088856491 - - PREDICTED: uncharacterized protein LOC100259061 [Vitis vinifera]
19 Hb_000046_120 0.0893572773 rubber biosynthesis Gene Name: 1-deoxy-D-xylulose-5-phosphate synthase putative 1-deoxy-D-xylulose 5-phosphate synthase [Hevea brasiliensis]
20 Hb_002259_090 0.0910710526 - - PREDICTED: ABC transporter G family member 11 [Jatropha curcas]

Gene co-expression network

sample Hb_002007_220 Hb_002007_220 Hb_018591_020 Hb_018591_020 Hb_002007_220--Hb_018591_020 Hb_000155_020 Hb_000155_020 Hb_002007_220--Hb_000155_020 Hb_033363_040 Hb_033363_040 Hb_002007_220--Hb_033363_040 Hb_003494_090 Hb_003494_090 Hb_002007_220--Hb_003494_090 Hb_000270_090 Hb_000270_090 Hb_002007_220--Hb_000270_090 Hb_001321_010 Hb_001321_010 Hb_002007_220--Hb_001321_010 Hb_000046_120 Hb_000046_120 Hb_018591_020--Hb_000046_120 Hb_018591_020--Hb_033363_040 Hb_025557_060 Hb_025557_060 Hb_018591_020--Hb_025557_060 Hb_000608_290 Hb_000608_290 Hb_018591_020--Hb_000608_290 Hb_000002_500 Hb_000002_500 Hb_018591_020--Hb_000002_500 Hb_011013_040 Hb_011013_040 Hb_000155_020--Hb_011013_040 Hb_001159_050 Hb_001159_050 Hb_000155_020--Hb_001159_050 Hb_012395_090 Hb_012395_090 Hb_000155_020--Hb_012395_090 Hb_010136_010 Hb_010136_010 Hb_000155_020--Hb_010136_010 Hb_004017_030 Hb_004017_030 Hb_000155_020--Hb_004017_030 Hb_003025_160 Hb_003025_160 Hb_033363_040--Hb_003025_160 Hb_004970_060 Hb_004970_060 Hb_033363_040--Hb_004970_060 Hb_002259_090 Hb_002259_090 Hb_033363_040--Hb_002259_090 Hb_033363_040--Hb_003494_090 Hb_000460_040 Hb_000460_040 Hb_003494_090--Hb_000460_040 Hb_002852_010 Hb_002852_010 Hb_003494_090--Hb_002852_010 Hb_005329_010 Hb_005329_010 Hb_003494_090--Hb_005329_010 Hb_003494_090--Hb_018591_020 Hb_000270_090--Hb_001321_010 Hb_004994_030 Hb_004994_030 Hb_000270_090--Hb_004994_030 Hb_011104_020 Hb_011104_020 Hb_000270_090--Hb_011104_020 Hb_001699_140 Hb_001699_140 Hb_000270_090--Hb_001699_140 Hb_002407_090 Hb_002407_090 Hb_000270_090--Hb_002407_090 Hb_001321_010--Hb_004994_030 Hb_001321_010--Hb_011104_020 Hb_001321_010--Hb_018591_020 Hb_001321_010--Hb_002407_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.196569 12.0888 58.9519 30.5914 0.148832 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.206946 0.0639414 2.06129 77.3706

CAGE analysis