Hb_002007_230

Information

Type -
Description -
Location Contig2007: 149220-153945
Sequence    

Annotation

kegg
ID rcu:RCOM_1431660
description lipoxygenase, putative (EC:1.13.11.12)
nr
ID XP_012089053.1
description PREDICTED: probable linoleate 9S-lipoxygenase 5 [Jatropha curcas]
swissprot
ID Q43191
description Probable linoleate 9S-lipoxygenase 5 OS=Solanum tuberosum GN=LOX1.5 PE=2 SV=1
trembl
ID A0A067JL03
description Lipoxygenase OS=Jatropha curcas GN=JCGZ_23341 PE=3 SV=1
Gene Ontology
ID GO:0005515
description probable linoleate 9s-lipoxygenase 5

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20382: 149879-150102 , PASA_asmbl_20383: 150103-150836
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002007_230 0.0 - - PREDICTED: probable linoleate 9S-lipoxygenase 5 [Jatropha curcas]
2 Hb_003086_200 0.0624877091 - - PREDICTED: secoisolariciresinol dehydrogenase-like [Jatropha curcas]
3 Hb_005797_030 0.0755070799 - - PREDICTED: MATE efflux family protein LAL5-like [Jatropha curcas]
4 Hb_000300_570 0.0936278868 transcription factor TF Family: MYB PREDICTED: transcription repressor MYB5-like [Jatropha curcas]
5 Hb_001864_010 0.0948786672 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000265_010 0.096938035 - - amino acid transporter, putative [Ricinus communis]
7 Hb_151364_010 0.106815978 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Jatropha curcas]
8 Hb_002553_120 0.1069035244 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor 1B [Jatropha curcas]
9 Hb_000380_040 0.1069580787 - - bel1 homeotic protein, putative [Ricinus communis]
10 Hb_012395_070 0.1079642613 - - PREDICTED: probable metal-nicotianamine transporter YSL6 [Jatropha curcas]
11 Hb_000556_200 0.1123913641 - - PREDICTED: AT-hook motif nuclear-localized protein 22 [Jatropha curcas]
12 Hb_000043_080 0.1127279065 - - lipid binding protein, putative [Ricinus communis]
13 Hb_005653_020 0.1130346853 transcription factor TF Family: C2H2 TRANSPARENT TESTA 1 protein, putative [Ricinus communis]
14 Hb_001104_280 0.1163808377 - - PREDICTED: UPF0481 protein At3g47200 [Jatropha curcas]
15 Hb_008503_020 0.116845258 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
16 Hb_001489_030 0.1188060266 - - PREDICTED: protein NRT1/ PTR FAMILY 4.6 [Jatropha curcas]
17 Hb_005489_160 0.1189212643 - - PREDICTED: primary amine oxidase-like [Jatropha curcas]
18 Hb_012053_030 0.1226228555 - - PREDICTED: GDSL esterase/lipase At5g22810 [Jatropha curcas]
19 Hb_006446_060 0.1260163408 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase At5g48380 isoform X1 [Populus euphratica]
20 Hb_000286_190 0.1268469016 - - PREDICTED: probable receptor-like protein kinase At1g11050 [Jatropha curcas]

Gene co-expression network

sample Hb_002007_230 Hb_002007_230 Hb_003086_200 Hb_003086_200 Hb_002007_230--Hb_003086_200 Hb_005797_030 Hb_005797_030 Hb_002007_230--Hb_005797_030 Hb_000300_570 Hb_000300_570 Hb_002007_230--Hb_000300_570 Hb_001864_010 Hb_001864_010 Hb_002007_230--Hb_001864_010 Hb_000265_010 Hb_000265_010 Hb_002007_230--Hb_000265_010 Hb_151364_010 Hb_151364_010 Hb_002007_230--Hb_151364_010 Hb_003086_200--Hb_000265_010 Hb_003086_200--Hb_005797_030 Hb_000043_080 Hb_000043_080 Hb_003086_200--Hb_000043_080 Hb_003086_200--Hb_000300_570 Hb_012053_030 Hb_012053_030 Hb_003086_200--Hb_012053_030 Hb_005797_030--Hb_001864_010 Hb_000920_360 Hb_000920_360 Hb_005797_030--Hb_000920_360 Hb_001104_280 Hb_001104_280 Hb_005797_030--Hb_001104_280 Hb_000286_190 Hb_000286_190 Hb_005797_030--Hb_000286_190 Hb_000300_570--Hb_012053_030 Hb_000300_570--Hb_000265_010 Hb_001489_030 Hb_001489_030 Hb_000300_570--Hb_001489_030 Hb_000185_060 Hb_000185_060 Hb_000300_570--Hb_000185_060 Hb_029508_030 Hb_029508_030 Hb_001864_010--Hb_029508_030 Hb_000221_170 Hb_000221_170 Hb_001864_010--Hb_000221_170 Hb_001864_010--Hb_000286_190 Hb_008503_020 Hb_008503_020 Hb_001864_010--Hb_008503_020 Hb_000265_010--Hb_012053_030 Hb_012395_070 Hb_012395_070 Hb_000265_010--Hb_012395_070 Hb_000265_010--Hb_001489_030 Hb_005489_160 Hb_005489_160 Hb_151364_010--Hb_005489_160 Hb_008053_070 Hb_008053_070 Hb_151364_010--Hb_008053_070 Hb_151364_010--Hb_000300_570 Hb_151364_010--Hb_012053_030 Hb_151364_010--Hb_005797_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.13975 76.1823 2.25195 9.39996 0.372868 0.477222
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.015378 0.0242023 0.0925067 115.681 5.62273

CAGE analysis