Hb_002007_240

Information

Type -
Description -
Location Contig2007: 167006-169448
Sequence    

Annotation

kegg
ID rcu:RCOM_1431650
description hypothetical protein
nr
ID XP_012089055.1
description PREDICTED: F-box protein At1g55000 [Jatropha curcas]
swissprot
ID Q9FZ32
description F-box protein At1g55000 OS=Arabidopsis thaliana GN=At1g55000 PE=1 SV=1
trembl
ID A0A067JU36
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23343 PE=4 SV=1
Gene Ontology
ID GO:0005515
description f-box protein at1g55000

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20386: 167044-169477
cDNA
(Sanger)
(ID:Location)		 029_I07.ab1: 167536-169477

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002007_240 0.0 - - PREDICTED: F-box protein At1g55000 [Jatropha curcas]
2 Hb_009701_010 0.0966124951 - - PREDICTED: putative inactive cadmium/zinc-transporting ATPase HMA3 [Jatropha curcas]
3 Hb_002400_400 0.1030028796 - - PREDICTED: topless-related protein 1-like isoform X3 [Jatropha curcas]
4 Hb_005214_090 0.1073615731 - - PREDICTED: uncharacterized protein LOC105636015 [Jatropha curcas]
5 Hb_000270_760 0.1086899278 - - PREDICTED: RNA-dependent RNA polymerase 2 isoform X1 [Jatropha curcas]
6 Hb_000200_280 0.1118004721 - - PREDICTED: uncharacterized protein LOC105636924 [Jatropha curcas]
7 Hb_002110_030 0.1129466315 - - PREDICTED: WD and tetratricopeptide repeats protein 1 isoform X3 [Jatropha curcas]
8 Hb_000244_220 0.1144470257 - - PREDICTED: bifunctional aspartokinase/homoserine dehydrogenase 1, chloroplastic-like [Jatropha curcas]
9 Hb_000327_340 0.1174527033 - - PREDICTED: ankyrin repeat-containing protein At3g12360 [Jatropha curcas]
10 Hb_000230_520 0.1174539736 - - PREDICTED: serine incorporator 3 [Jatropha curcas]
11 Hb_000856_310 0.1236197208 - - PREDICTED: hypersensitive-induced response protein 1 [Jatropha curcas]
12 Hb_011311_020 0.1247505871 - - PREDICTED: myosin-11 isoform X2 [Jatropha curcas]
13 Hb_000740_110 0.1257139737 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_01850 [Jatropha curcas]
14 Hb_089140_030 0.1264513619 - - PREDICTED: thiol protease aleurain-like [Jatropha curcas]
15 Hb_006831_040 0.1265129039 - - PREDICTED: enhancer of mRNA-decapping protein 4-like isoform X1 [Jatropha curcas]
16 Hb_005306_130 0.1269813217 - - dead box ATP-dependent RNA helicase, putative [Ricinus communis]
17 Hb_000227_240 0.1278801964 - - hypothetical protein JCGZ_02139 [Jatropha curcas]
18 Hb_000616_020 0.1279474226 - - PREDICTED: cysteine desulfurase, mitochondrial isoform X1 [Jatropha curcas]
19 Hb_001427_070 0.1287549707 - - PREDICTED: xaa-Pro dipeptidase [Jatropha curcas]
20 Hb_011512_090 0.1305910874 - - Hydroxyethylthiazole kinase, putative [Ricinus communis]

Gene co-expression network

sample Hb_002007_240 Hb_002007_240 Hb_009701_010 Hb_009701_010 Hb_002007_240--Hb_009701_010 Hb_002400_400 Hb_002400_400 Hb_002007_240--Hb_002400_400 Hb_005214_090 Hb_005214_090 Hb_002007_240--Hb_005214_090 Hb_000270_760 Hb_000270_760 Hb_002007_240--Hb_000270_760 Hb_000200_280 Hb_000200_280 Hb_002007_240--Hb_000200_280 Hb_002110_030 Hb_002110_030 Hb_002007_240--Hb_002110_030 Hb_004705_140 Hb_004705_140 Hb_009701_010--Hb_004705_140 Hb_011311_020 Hb_011311_020 Hb_009701_010--Hb_011311_020 Hb_000227_240 Hb_000227_240 Hb_009701_010--Hb_000227_240 Hb_000853_120 Hb_000853_120 Hb_009701_010--Hb_000853_120 Hb_009564_030 Hb_009564_030 Hb_009701_010--Hb_009564_030 Hb_011512_090 Hb_011512_090 Hb_002400_400--Hb_011512_090 Hb_000244_220 Hb_000244_220 Hb_002400_400--Hb_000244_220 Hb_002400_400--Hb_005214_090 Hb_002400_400--Hb_000200_280 Hb_000976_040 Hb_000976_040 Hb_002400_400--Hb_000976_040 Hb_000856_310 Hb_000856_310 Hb_005214_090--Hb_000856_310 Hb_005214_090--Hb_000244_220 Hb_001575_010 Hb_001575_010 Hb_005214_090--Hb_001575_010 Hb_000627_180 Hb_000627_180 Hb_005214_090--Hb_000627_180 Hb_156850_070 Hb_156850_070 Hb_005214_090--Hb_156850_070 Hb_089140_030 Hb_089140_030 Hb_005214_090--Hb_089140_030 Hb_000327_340 Hb_000327_340 Hb_000270_760--Hb_000327_340 Hb_000318_510 Hb_000318_510 Hb_000270_760--Hb_000318_510 Hb_001700_040 Hb_001700_040 Hb_000270_760--Hb_001700_040 Hb_000270_760--Hb_000244_220 Hb_000270_760--Hb_000856_310 Hb_003531_060 Hb_003531_060 Hb_000270_760--Hb_003531_060 Hb_000200_280--Hb_000976_040 Hb_002827_020 Hb_002827_020 Hb_000200_280--Hb_002827_020 Hb_000200_280--Hb_089140_030 Hb_011716_090 Hb_011716_090 Hb_000200_280--Hb_011716_090 Hb_000200_280--Hb_011512_090 Hb_000200_280--Hb_002110_030 Hb_006831_040 Hb_006831_040 Hb_002110_030--Hb_006831_040 Hb_001019_180 Hb_001019_180 Hb_002110_030--Hb_001019_180 Hb_073562_010 Hb_073562_010 Hb_002110_030--Hb_073562_010 Hb_000330_040 Hb_000330_040 Hb_002110_030--Hb_000330_040 Hb_002110_030--Hb_011512_090 Hb_002110_030--Hb_001575_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
141.658 224.689 21.7833 52.8542 140.925 183.105
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
121.842 75.8433 152.577 236.074 35.5035

CAGE analysis