Hb_002007_250

Information

Type -
Description -
Location Contig2007: 170539-174671
Sequence    

Annotation

kegg
ID rcu:RCOM_1431640
description hypothetical protein
nr
ID XP_002512384.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9FZ33
description Protein AUXIN RESPONSE 4 OS=Arabidopsis thaliana GN=AXR4 PE=2 SV=1
trembl
ID B9RF65
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1431640 PE=4 SV=1
Gene Ontology
ID GO:0005739
description protein auxin response 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20391: 175524-175899
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002007_250 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_012654_010 0.0732348463 transcription factor TF Family: MYB-related PREDICTED: uncharacterized protein LOC105629849 [Jatropha curcas]
3 Hb_001504_160 0.0751936096 - - PREDICTED: nuclear pore complex protein NUP96 [Jatropha curcas]
4 Hb_000076_080 0.0769619221 - - PREDICTED: protein MOS2 [Jatropha curcas]
5 Hb_004044_020 0.0801713705 - - PREDICTED: nudix hydrolase 19, chloroplastic [Jatropha curcas]
6 Hb_000107_100 0.0825815066 - - hypothetical protein JCGZ_16208 [Jatropha curcas]
7 Hb_004724_360 0.0828088555 - - OTU-like cysteine protease family protein [Populus trichocarpa]
8 Hb_017168_010 0.0835617633 - - conserved hypothetical protein [Ricinus communis]
9 Hb_010222_030 0.0836672481 - - PREDICTED: uncharacterized protein LOC105647641 [Jatropha curcas]
10 Hb_005237_010 0.0846045764 - - PREDICTED: uncharacterized protein LOC105630921 [Jatropha curcas]
11 Hb_002097_090 0.0850221618 - - Splicing factor 3A subunit, putative [Ricinus communis]
12 Hb_005288_160 0.0860658416 - - PREDICTED: uncharacterized protein LOC105647746 isoform X1 [Jatropha curcas]
13 Hb_000684_420 0.0874399232 transcription factor TF Family: C3H zinc finger protein, putative [Ricinus communis]
14 Hb_003097_150 0.088409053 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 24 [Jatropha curcas]
15 Hb_000139_250 0.0887203715 - - PREDICTED: putative methyltransferase C9orf114 [Jatropha curcas]
16 Hb_001157_060 0.0890090191 - - PREDICTED: putative nitric oxide synthase [Jatropha curcas]
17 Hb_000340_510 0.0898410452 - - PREDICTED: serine/threonine-protein phosphatase BSL1 [Jatropha curcas]
18 Hb_000977_180 0.0906712525 - - PREDICTED: splicing factor U2AF-associated protein 2 isoform X1 [Jatropha curcas]
19 Hb_003384_030 0.0912784357 - - PREDICTED: eukaryotic translation initiation factor 2 subunit beta-like [Jatropha curcas]
20 Hb_010222_080 0.0920468171 - - PREDICTED: pentatricopeptide repeat-containing protein At2g06000 [Jatropha curcas]

Gene co-expression network

sample Hb_002007_250 Hb_002007_250 Hb_012654_010 Hb_012654_010 Hb_002007_250--Hb_012654_010 Hb_001504_160 Hb_001504_160 Hb_002007_250--Hb_001504_160 Hb_000076_080 Hb_000076_080 Hb_002007_250--Hb_000076_080 Hb_004044_020 Hb_004044_020 Hb_002007_250--Hb_004044_020 Hb_000107_100 Hb_000107_100 Hb_002007_250--Hb_000107_100 Hb_004724_360 Hb_004724_360 Hb_002007_250--Hb_004724_360 Hb_012654_010--Hb_001504_160 Hb_012654_010--Hb_000107_100 Hb_000139_250 Hb_000139_250 Hb_012654_010--Hb_000139_250 Hb_001057_010 Hb_001057_010 Hb_012654_010--Hb_001057_010 Hb_005214_160 Hb_005214_160 Hb_012654_010--Hb_005214_160 Hb_002701_080 Hb_002701_080 Hb_012654_010--Hb_002701_080 Hb_001504_160--Hb_000076_080 Hb_000230_330 Hb_000230_330 Hb_001504_160--Hb_000230_330 Hb_001504_160--Hb_004724_360 Hb_001504_160--Hb_000107_100 Hb_003384_030 Hb_003384_030 Hb_001504_160--Hb_003384_030 Hb_000076_080--Hb_004724_360 Hb_000684_420 Hb_000684_420 Hb_000076_080--Hb_000684_420 Hb_002097_090 Hb_002097_090 Hb_000076_080--Hb_002097_090 Hb_002400_180 Hb_002400_180 Hb_000076_080--Hb_002400_180 Hb_000186_280 Hb_000186_280 Hb_000076_080--Hb_000186_280 Hb_000088_200 Hb_000088_200 Hb_004044_020--Hb_000088_200 Hb_004044_020--Hb_000684_420 Hb_000236_280 Hb_000236_280 Hb_004044_020--Hb_000236_280 Hb_031939_010 Hb_031939_010 Hb_004044_020--Hb_031939_010 Hb_012305_070 Hb_012305_070 Hb_004044_020--Hb_012305_070 Hb_004525_100 Hb_004525_100 Hb_004044_020--Hb_004525_100 Hb_017168_010 Hb_017168_010 Hb_000107_100--Hb_017168_010 Hb_000340_510 Hb_000340_510 Hb_000107_100--Hb_000340_510 Hb_001040_170 Hb_001040_170 Hb_000107_100--Hb_001040_170 Hb_001366_040 Hb_001366_040 Hb_000107_100--Hb_001366_040 Hb_000327_310 Hb_000327_310 Hb_004724_360--Hb_000327_310 Hb_004724_360--Hb_000684_420 Hb_000001_180 Hb_000001_180 Hb_004724_360--Hb_000001_180 Hb_005295_040 Hb_005295_040 Hb_004724_360--Hb_005295_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.03341 1.04847 0.515791 0.602784 4.01715 3.40659
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.52491 1.99962 1.50996 1.28328 0.796778

CAGE analysis