Hb_002007_260

Information

Type -
Description -
Location Contig2007: 178618-186342
Sequence    

Annotation

kegg
ID rcu:RCOM_1431510
description beta-mannosidase, putative (EC:3.2.1.152)
nr
ID XP_002512381.1
description beta-mannosidase, putative [Ricinus communis]
swissprot
ID Q5H7P5
description Mannosylglycoprotein endo-beta-mannosidase OS=Lilium longiflorum GN=EBM PE=1 SV=4
trembl
ID B9RF62
description Beta-mannosidase, putative OS=Ricinus communis GN=RCOM_1431510 PE=4 SV=1
Gene Ontology
ID GO:0033947
description mannosylglycoprotein endo-beta-mannosidase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20392: 178627-183284 , PASA_asmbl_20394: 180671-180813 , PASA_asmbl_20395: 182807-183045 , PASA_asmbl_20396: 184391-186189
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002007_260 0.0 - - beta-mannosidase, putative [Ricinus communis]
2 Hb_001246_130 0.0562129409 - - PREDICTED: NAD-dependent malic enzyme 62 kDa isoform, mitochondrial [Jatropha curcas]
3 Hb_010042_030 0.065609136 - - PREDICTED: UDP-N-acetylglucosamine diphosphorylase 1 [Jatropha curcas]
4 Hb_001085_290 0.0656987374 - - 26S proteasome regulatory subunit family protein [Populus trichocarpa]
5 Hb_001159_030 0.0658225757 - - PREDICTED: probable protein S-acyltransferase 14 [Jatropha curcas]
6 Hb_001558_040 0.0688906236 - - PREDICTED: GPI ethanolamine phosphate transferase 2 [Jatropha curcas]
7 Hb_030982_010 0.075221479 - - conserved hypothetical protein [Ricinus communis]
8 Hb_008397_010 0.075747827 - - PREDICTED: uncharacterized protein LOC105640192 isoform X2 [Jatropha curcas]
9 Hb_003038_040 0.0772658186 transcription factor TF Family: TUB phosphoric diester hydrolase, putative [Ricinus communis]
10 Hb_001307_240 0.0776637014 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase SUVR2 isoform X2 [Jatropha curcas]
11 Hb_060980_010 0.0780082554 - - PREDICTED: BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1-like isoform X1 [Populus euphratica]
12 Hb_000579_130 0.0797594962 - - ubiquitin-protein ligase, putative [Ricinus communis]
13 Hb_000320_290 0.0801865422 - - PREDICTED: putative lactoylglutathione lyase [Jatropha curcas]
14 Hb_000017_230 0.0803106204 - - hypothetical protein JCGZ_20558 [Jatropha curcas]
15 Hb_021165_010 0.081883685 - - PREDICTED: splicing factor U2af large subunit B-like isoform X1 [Jatropha curcas]
16 Hb_065500_020 0.0830642601 - - Exocyst complex component sec3A isoform 1 [Theobroma cacao]
17 Hb_001552_030 0.0839803441 - - PREDICTED: galactoside 2-alpha-L-fucosyltransferase-like isoform X1 [Jatropha curcas]
18 Hb_001587_030 0.0846062855 - - hypothetical protein JCGZ_09892 [Jatropha curcas]
19 Hb_000085_260 0.0846565917 - - glycerophosphoryl diester phosphodiesterase, putative [Ricinus communis]
20 Hb_000001_170 0.0848125982 - - amino acid transporter, putative [Ricinus communis]

Gene co-expression network

sample Hb_002007_260 Hb_002007_260 Hb_001246_130 Hb_001246_130 Hb_002007_260--Hb_001246_130 Hb_010042_030 Hb_010042_030 Hb_002007_260--Hb_010042_030 Hb_001085_290 Hb_001085_290 Hb_002007_260--Hb_001085_290 Hb_001159_030 Hb_001159_030 Hb_002007_260--Hb_001159_030 Hb_001558_040 Hb_001558_040 Hb_002007_260--Hb_001558_040 Hb_030982_010 Hb_030982_010 Hb_002007_260--Hb_030982_010 Hb_001246_130--Hb_030982_010 Hb_006120_050 Hb_006120_050 Hb_001246_130--Hb_006120_050 Hb_000054_040 Hb_000054_040 Hb_001246_130--Hb_000054_040 Hb_002552_040 Hb_002552_040 Hb_001246_130--Hb_002552_040 Hb_002045_170 Hb_002045_170 Hb_001246_130--Hb_002045_170 Hb_000085_260 Hb_000085_260 Hb_010042_030--Hb_000085_260 Hb_010042_030--Hb_001159_030 Hb_005062_110 Hb_005062_110 Hb_010042_030--Hb_005062_110 Hb_000579_130 Hb_000579_130 Hb_010042_030--Hb_000579_130 Hb_000320_290 Hb_000320_290 Hb_010042_030--Hb_000320_290 Hb_000088_050 Hb_000088_050 Hb_001085_290--Hb_000088_050 Hb_000017_230 Hb_000017_230 Hb_001085_290--Hb_000017_230 Hb_001552_030 Hb_001552_030 Hb_001085_290--Hb_001552_030 Hb_060980_010 Hb_060980_010 Hb_001085_290--Hb_060980_010 Hb_085742_010 Hb_085742_010 Hb_001085_290--Hb_085742_010 Hb_001159_030--Hb_000085_260 Hb_001159_030--Hb_005062_110 Hb_003038_040 Hb_003038_040 Hb_001159_030--Hb_003038_040 Hb_001097_040 Hb_001097_040 Hb_001159_030--Hb_001097_040 Hb_001307_240 Hb_001307_240 Hb_001558_040--Hb_001307_240 Hb_001558_040--Hb_000579_130 Hb_001085_080 Hb_001085_080 Hb_001558_040--Hb_001085_080 Hb_000020_160 Hb_000020_160 Hb_001558_040--Hb_000020_160 Hb_158845_060 Hb_158845_060 Hb_001558_040--Hb_158845_060 Hb_121089_030 Hb_121089_030 Hb_030982_010--Hb_121089_030 Hb_030982_010--Hb_000320_290 Hb_030982_010--Hb_006120_050 Hb_000163_090 Hb_000163_090 Hb_030982_010--Hb_000163_090 Hb_021165_010 Hb_021165_010 Hb_030982_010--Hb_021165_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.37582 9.3227 11.7616 15.7005 6.59573 8.6598
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.5041 3.21877 4.59056 13.3245 11.3548

CAGE analysis