Hb_002007_270

Information

Type -
Description -
Location Contig2007: 187002-188975
Sequence    

Annotation

kegg
ID pop:POPTR_0013s02200g
description POPTRDRAFT_570829; hypothetical protein
nr
ID XP_012089060.1
description PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At3g05340-like [Jatropha curcas]
swissprot
ID Q9MA85
description Pentatricopeptide repeat-containing protein At3g05340 OS=Arabidopsis thaliana GN=PCMP-E83 PE=2 SV=2
trembl
ID B9I7R7
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0013s02200g PE=4 SV=2
Gene Ontology
ID GO:0005515
description pentatricopeptide repeat-containing protein at3g05340

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20396: 184391-186189 , PASA_asmbl_20397: 187026-187137 , PASA_asmbl_20399: 188066-188417
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002007_270 0.0 - - PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At3g05340-like [Jatropha curcas]
2 Hb_004852_030 0.0826720272 - - PREDICTED: uncharacterized protein LOC105639923 [Jatropha curcas]
3 Hb_001538_010 0.0931125096 - - -
4 Hb_026048_100 0.0983020389 - - PREDICTED: putative cell division cycle ATPase [Jatropha curcas]
5 Hb_000622_310 0.102874441 - - PREDICTED: BON1-associated protein 2 [Jatropha curcas]
6 Hb_003297_030 0.1033673452 - - PREDICTED: uncharacterized protein LOC105640530 [Jatropha curcas]
7 Hb_000172_400 0.1044578678 - - Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis]
8 Hb_185467_020 0.1047151453 - - Cucumisin precursor, putative [Ricinus communis]
9 Hb_000803_150 0.1050648625 - - PREDICTED: uncharacterized protein LOC105648311 isoform X2 [Jatropha curcas]
10 Hb_000463_040 0.1063982279 - - PREDICTED: histone-lysine N-methyltransferase family member SUVH9-like [Jatropha curcas]
11 Hb_066807_010 0.1067680162 - - PREDICTED: uncharacterized protein LOC105628412 [Jatropha curcas]
12 Hb_007441_350 0.1077544235 - - PREDICTED: probable purine permease 11 [Jatropha curcas]
13 Hb_001936_050 0.1083283919 - - PREDICTED: pentatricopeptide repeat-containing protein At4g08210-like [Prunus mume]
14 Hb_001981_070 0.1084195997 - - tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase, putative [Ricinus communis]
15 Hb_004586_190 0.1089954701 - - PREDICTED: protein CutA, chloroplastic [Jatropha curcas]
16 Hb_000576_030 0.1091779918 - - PREDICTED: pentatricopeptide repeat-containing protein At2g20540 [Jatropha curcas]
17 Hb_000417_180 0.1116594048 - - 60S ribosomal protein L11, putative [Ricinus communis]
18 Hb_005839_120 0.1128446169 - - PREDICTED: pentatricopeptide repeat-containing protein At4g02750-like [Jatropha curcas]
19 Hb_000421_260 0.1160778924 - - PREDICTED: carbamoyl-phosphate synthase large chain, chloroplastic [Jatropha curcas]
20 Hb_001040_170 0.1181349037 - - PREDICTED: pentatricopeptide repeat-containing protein At4g21705, mitochondrial isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_002007_270 Hb_002007_270 Hb_004852_030 Hb_004852_030 Hb_002007_270--Hb_004852_030 Hb_001538_010 Hb_001538_010 Hb_002007_270--Hb_001538_010 Hb_026048_100 Hb_026048_100 Hb_002007_270--Hb_026048_100 Hb_000622_310 Hb_000622_310 Hb_002007_270--Hb_000622_310 Hb_003297_030 Hb_003297_030 Hb_002007_270--Hb_003297_030 Hb_000172_400 Hb_000172_400 Hb_002007_270--Hb_000172_400 Hb_000803_150 Hb_000803_150 Hb_004852_030--Hb_000803_150 Hb_185467_020 Hb_185467_020 Hb_004852_030--Hb_185467_020 Hb_066807_010 Hb_066807_010 Hb_004852_030--Hb_066807_010 Hb_000165_030 Hb_000165_030 Hb_004852_030--Hb_000165_030 Hb_001981_070 Hb_001981_070 Hb_004852_030--Hb_001981_070 Hb_001141_330 Hb_001141_330 Hb_001538_010--Hb_001141_330 Hb_001936_050 Hb_001936_050 Hb_001538_010--Hb_001936_050 Hb_001538_010--Hb_003297_030 Hb_000421_260 Hb_000421_260 Hb_001538_010--Hb_000421_260 Hb_001538_010--Hb_000803_150 Hb_003638_030 Hb_003638_030 Hb_026048_100--Hb_003638_030 Hb_026048_100--Hb_066807_010 Hb_006602_020 Hb_006602_020 Hb_026048_100--Hb_006602_020 Hb_000700_090 Hb_000700_090 Hb_026048_100--Hb_000700_090 Hb_000057_060 Hb_000057_060 Hb_026048_100--Hb_000057_060 Hb_026048_100--Hb_000172_400 Hb_000124_020 Hb_000124_020 Hb_000622_310--Hb_000124_020 Hb_010863_080 Hb_010863_080 Hb_000622_310--Hb_010863_080 Hb_000186_240 Hb_000186_240 Hb_000622_310--Hb_000186_240 Hb_000592_050 Hb_000592_050 Hb_000622_310--Hb_000592_050 Hb_000622_310--Hb_000172_400 Hb_000179_210 Hb_000179_210 Hb_000622_310--Hb_000179_210 Hb_003297_030--Hb_010863_080 Hb_003609_040 Hb_003609_040 Hb_003297_030--Hb_003609_040 Hb_001635_100 Hb_001635_100 Hb_003297_030--Hb_001635_100 Hb_098993_010 Hb_098993_010 Hb_003297_030--Hb_098993_010 Hb_003297_030--Hb_000179_210 Hb_000030_010 Hb_000030_010 Hb_003297_030--Hb_000030_010 Hb_002207_100 Hb_002207_100 Hb_000172_400--Hb_002207_100 Hb_000784_090 Hb_000784_090 Hb_000172_400--Hb_000784_090 Hb_001454_060 Hb_001454_060 Hb_000172_400--Hb_001454_060 Hb_000340_510 Hb_000340_510 Hb_000172_400--Hb_000340_510 Hb_001030_120 Hb_001030_120 Hb_000172_400--Hb_001030_120 Hb_000172_400--Hb_003638_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.75964 1.92083 0.827677 0.653408 6.32186 7.14656
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.28986 5.11688 5.56712 1.05383 0.685117

CAGE analysis