Hb_002007_290

Information

Type -
Description -
Location Contig2007: 196996-202484
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002007_290 0.0 - - -
2 Hb_001230_010 0.0973188732 - - -
3 Hb_166786_030 0.2026868051 - - PREDICTED: uncharacterized protein LOC105775425 [Gossypium raimondii]
4 Hb_002094_020 0.2029194457 - - PREDICTED: alpha-copaene synthase-like [Jatropha curcas]
5 Hb_000928_230 0.2076737296 - - conserved hypothetical protein [Ricinus communis]
6 Hb_017111_010 0.2097342296 - - PREDICTED: inositol transporter 4 [Jatropha curcas]
7 Hb_031862_050 0.2137325454 - - Cell division cycle protein, putative [Ricinus communis]
8 Hb_002307_050 0.217499216 - - PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic [Jatropha curcas]
9 Hb_027751_030 0.2228280719 - - -
10 Hb_175445_010 0.2302931044 - - Pectin methylesterase 31 isoform 2, partial [Theobroma cacao]
11 Hb_000270_400 0.2332756783 - - lipase, putative [Ricinus communis]
12 Hb_048610_010 0.2337981879 - - -
13 Hb_029162_020 0.2369222892 - - -
14 Hb_123104_010 0.2401314443 - - PREDICTED: uncharacterized protein LOC104216022, partial [Nicotiana sylvestris]
15 Hb_001980_020 0.2405337625 - - -
16 Hb_126669_010 0.2408102799 transcription factor TF Family: bHLH lMYC4 [Hevea brasiliensis]
17 Hb_007545_210 0.2416183045 transcription factor TF Family: C2C2-Dof PREDICTED: cyclic dof factor 3-like [Jatropha curcas]
18 Hb_000523_020 0.2463761145 - - PREDICTED: uncharacterized protein LOC105650610 [Jatropha curcas]
19 Hb_004254_040 0.2469067459 - - PREDICTED: uncharacterized protein LOC105650678 [Jatropha curcas]
20 Hb_002078_430 0.2470444234 - - hypothetical protein PRUPE_ppa014280mg [Prunus persica]

Gene co-expression network

sample Hb_002007_290 Hb_002007_290 Hb_001230_010 Hb_001230_010 Hb_002007_290--Hb_001230_010 Hb_166786_030 Hb_166786_030 Hb_002007_290--Hb_166786_030 Hb_002094_020 Hb_002094_020 Hb_002007_290--Hb_002094_020 Hb_000928_230 Hb_000928_230 Hb_002007_290--Hb_000928_230 Hb_017111_010 Hb_017111_010 Hb_002007_290--Hb_017111_010 Hb_031862_050 Hb_031862_050 Hb_002007_290--Hb_031862_050 Hb_001230_010--Hb_166786_030 Hb_001230_010--Hb_002094_020 Hb_001230_010--Hb_000928_230 Hb_001230_010--Hb_031862_050 Hb_001230_010--Hb_017111_010 Hb_001178_020 Hb_001178_020 Hb_166786_030--Hb_001178_020 Hb_004254_040 Hb_004254_040 Hb_166786_030--Hb_004254_040 Hb_024828_040 Hb_024828_040 Hb_166786_030--Hb_024828_040 Hb_001635_220 Hb_001635_220 Hb_166786_030--Hb_001635_220 Hb_002094_020--Hb_017111_010 Hb_027751_030 Hb_027751_030 Hb_002094_020--Hb_027751_030 Hb_000959_360 Hb_000959_360 Hb_002094_020--Hb_000959_360 Hb_002094_020--Hb_000928_230 Hb_126669_010 Hb_126669_010 Hb_002094_020--Hb_126669_010 Hb_000928_230--Hb_126669_010 Hb_000270_400 Hb_000270_400 Hb_000928_230--Hb_000270_400 Hb_000523_020 Hb_000523_020 Hb_000928_230--Hb_000523_020 Hb_002627_060 Hb_002627_060 Hb_000928_230--Hb_002627_060 Hb_000172_610 Hb_000172_610 Hb_000928_230--Hb_000172_610 Hb_170116_010 Hb_170116_010 Hb_000928_230--Hb_170116_010 Hb_000186_100 Hb_000186_100 Hb_017111_010--Hb_000186_100 Hb_017111_010--Hb_000523_020 Hb_002388_060 Hb_002388_060 Hb_017111_010--Hb_002388_060 Hb_003687_200 Hb_003687_200 Hb_017111_010--Hb_003687_200 Hb_007545_210 Hb_007545_210 Hb_017111_010--Hb_007545_210 Hb_017111_010--Hb_126669_010 Hb_168418_010 Hb_168418_010 Hb_031862_050--Hb_168418_010 Hb_000046_020 Hb_000046_020 Hb_031862_050--Hb_000046_020 Hb_029162_020 Hb_029162_020 Hb_031862_050--Hb_029162_020 Hb_048610_010 Hb_048610_010 Hb_031862_050--Hb_048610_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.59189 0.295645 0.015597 0 0.843867 3.75756
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.62198 1.61344 0.277116 0.105504 0

CAGE analysis