Hb_002007_340

Information

Type -
Description -
Location Contig2007: 229940-231583
Sequence    

Annotation

kegg
ID rcu:RCOM_1431440
description cyclin-dependent protein kinase, putative
nr
ID XP_002512374.1
description cyclin-dependent protein kinase, putative [Ricinus communis]
swissprot
ID Q75HV0
description Cyclin-P3-1 OS=Oryza sativa subsp. japonica GN=CYCP3-1 PE=3 SV=1
trembl
ID B9RF55
description Cyclin-dependent protein kinase, putative OS=Ricinus communis GN=RCOM_1431440 PE=4 SV=1
Gene Ontology
ID GO:0019901
description cyclin-p3-1-like isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20408: 229934-230506
cDNA
(Sanger)
(ID:Location)		 042_G23.ab1: 229949-230506 , 051_C14.ab1: 229949-230506

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002007_340 0.0 - - cyclin-dependent protein kinase, putative [Ricinus communis]
2 Hb_140459_010 0.1967835294 - - thioredoxin f-type, putative [Ricinus communis]
3 Hb_016564_010 0.20702986 - - PREDICTED: uncharacterized protein LOC101764501 [Setaria italica]
4 Hb_008699_030 0.2083843056 - - hypothetical protein CISIN_1g017963mg [Citrus sinensis]
5 Hb_000465_320 0.2100981901 - - PREDICTED: nudix hydrolase 8 [Jatropha curcas]
6 Hb_006154_020 0.2127414938 transcription factor TF Family: C2H2 hypothetical protein RCOM_1621120 [Ricinus communis]
7 Hb_006573_290 0.2141466252 - - PREDICTED: reticulon-like protein B5 [Jatropha curcas]
8 Hb_004672_030 0.2158737912 - - proline oxidase [Manihot esculenta]
9 Hb_183086_050 0.2171072318 - - PREDICTED: metal-nicotianamine transporter YSL3 [Jatropha curcas]
10 Hb_003453_050 0.217981432 - - PREDICTED: calcium-binding mitochondrial carrier protein SCaMC-3-like [Jatropha curcas]
11 Hb_002325_070 0.2185527118 - - ATP binding protein, putative [Ricinus communis]
12 Hb_001454_100 0.2198729588 - - PREDICTED: protein RALF-like 33 [Jatropha curcas]
13 Hb_000175_230 0.2215103382 - - PREDICTED: protein LURP-one-related 5 [Jatropha curcas]
14 Hb_010883_190 0.2223003543 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000389_050 0.2229197038 - - PREDICTED: uncharacterized protein LOC105650917 [Jatropha curcas]
16 Hb_002609_040 0.2245446781 transcription factor TF Family: MYB PREDICTED: transcription factor DIVARICATA [Jatropha curcas]
17 Hb_000615_050 0.2307861875 - - Potassium transporter 11 family protein [Populus trichocarpa]
18 Hb_001004_150 0.23146142 - - PREDICTED: calcium-binding mitochondrial carrier protein SCaMC-3-like [Jatropha curcas]
19 Hb_006442_020 0.2318476807 - - PREDICTED: very-long-chain enoyl-CoA reductase [Jatropha curcas]
20 Hb_011249_020 0.2353926732 - - PREDICTED: putative clathrin assembly protein At5g35200 [Jatropha curcas]

Gene co-expression network

sample Hb_002007_340 Hb_002007_340 Hb_140459_010 Hb_140459_010 Hb_002007_340--Hb_140459_010 Hb_016564_010 Hb_016564_010 Hb_002007_340--Hb_016564_010 Hb_008699_030 Hb_008699_030 Hb_002007_340--Hb_008699_030 Hb_000465_320 Hb_000465_320 Hb_002007_340--Hb_000465_320 Hb_006154_020 Hb_006154_020 Hb_002007_340--Hb_006154_020 Hb_006573_290 Hb_006573_290 Hb_002007_340--Hb_006573_290 Hb_183612_070 Hb_183612_070 Hb_140459_010--Hb_183612_070 Hb_020378_060 Hb_020378_060 Hb_140459_010--Hb_020378_060 Hb_001138_060 Hb_001138_060 Hb_140459_010--Hb_001138_060 Hb_002475_140 Hb_002475_140 Hb_140459_010--Hb_002475_140 Hb_003211_030 Hb_003211_030 Hb_140459_010--Hb_003211_030 Hb_001863_020 Hb_001863_020 Hb_140459_010--Hb_001863_020 Hb_001454_100 Hb_001454_100 Hb_016564_010--Hb_001454_100 Hb_001153_120 Hb_001153_120 Hb_016564_010--Hb_001153_120 Hb_000389_050 Hb_000389_050 Hb_016564_010--Hb_000389_050 Hb_001004_150 Hb_001004_150 Hb_016564_010--Hb_001004_150 Hb_025466_010 Hb_025466_010 Hb_016564_010--Hb_025466_010 Hb_003097_060 Hb_003097_060 Hb_016564_010--Hb_003097_060 Hb_015675_030 Hb_015675_030 Hb_008699_030--Hb_015675_030 Hb_000240_030 Hb_000240_030 Hb_008699_030--Hb_000240_030 Hb_001195_070 Hb_001195_070 Hb_008699_030--Hb_001195_070 Hb_003207_020 Hb_003207_020 Hb_008699_030--Hb_003207_020 Hb_000946_110 Hb_000946_110 Hb_008699_030--Hb_000946_110 Hb_001124_100 Hb_001124_100 Hb_008699_030--Hb_001124_100 Hb_003453_050 Hb_003453_050 Hb_000465_320--Hb_003453_050 Hb_031527_110 Hb_031527_110 Hb_000465_320--Hb_031527_110 Hb_000477_040 Hb_000477_040 Hb_000465_320--Hb_000477_040 Hb_000107_510 Hb_000107_510 Hb_000465_320--Hb_000107_510 Hb_011606_020 Hb_011606_020 Hb_000465_320--Hb_011606_020 Hb_001481_130 Hb_001481_130 Hb_000465_320--Hb_001481_130 Hb_006154_020--Hb_001124_100 Hb_006154_020--Hb_008699_030 Hb_183086_050 Hb_183086_050 Hb_006154_020--Hb_183086_050 Hb_113818_010 Hb_113818_010 Hb_006154_020--Hb_113818_010 Hb_003687_250 Hb_003687_250 Hb_006154_020--Hb_003687_250 Hb_008053_050 Hb_008053_050 Hb_006154_020--Hb_008053_050 Hb_000649_140 Hb_000649_140 Hb_006573_290--Hb_000649_140 Hb_148209_010 Hb_148209_010 Hb_006573_290--Hb_148209_010 Hb_021409_080 Hb_021409_080 Hb_006573_290--Hb_021409_080 Hb_002154_110 Hb_002154_110 Hb_006573_290--Hb_002154_110 Hb_000428_060 Hb_000428_060 Hb_006573_290--Hb_000428_060 Hb_000946_100 Hb_000946_100 Hb_006573_290--Hb_000946_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.59722 6.64266 3.27021 26.1075 2.14238 0.640926
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
19.3901 10.914 17.8867 1.68407 26.6662

CAGE analysis