Hb_002007_350

Information

Type -
Description -
Location Contig2007: 231872-239679
Sequence    

Annotation

kegg
ID pop:POPTR_0005s03670g
description hypothetical protein
nr
ID XP_012089066.1
description PREDICTED: mitochondrial Rho GTPase 1-like [Jatropha curcas]
swissprot
ID Q8RXF8
description Mitochondrial Rho GTPase 1 OS=Arabidopsis thaliana GN=MIRO1 PE=1 SV=1
trembl
ID A0A067JL15
description Mitochondrial Rho GTPase OS=Jatropha curcas GN=JCGZ_23356 PE=3 SV=1
Gene Ontology
ID GO:0003924
description mitochondrial rho gtpase 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20409: 233006-239675
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002007_350 0.0 - - PREDICTED: mitochondrial Rho GTPase 1-like [Jatropha curcas]
2 Hb_009265_080 0.0533887531 - - PREDICTED: apoptosis inhibitor 5 [Jatropha curcas]
3 Hb_008253_010 0.0565468251 - - PREDICTED: uncharacterized protein LOC105633240 [Jatropha curcas]
4 Hb_004678_060 0.0610067665 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5 [Jatropha curcas]
5 Hb_007590_080 0.0645876839 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP19-4 [Malus domestica]
6 Hb_000803_300 0.0671193803 - - nuclear movement protein nudc, putative [Ricinus communis]
7 Hb_003656_160 0.0700242034 transcription factor TF Family: Alfin-like hypothetical protein B456_013G226400 [Gossypium raimondii]
8 Hb_000481_040 0.0706651991 - - developmentally regulated GTP-binding protein, putative [Ricinus communis]
9 Hb_008887_050 0.0731550688 - - PREDICTED: DNA-binding protein BIN4 [Jatropha curcas]
10 Hb_031939_010 0.0742077383 - - Coiled-coil domain-containing protein, putative [Ricinus communis]
11 Hb_001226_180 0.0743455541 - - peptidyl-prolyl cis-trans isomerase, putative [Ricinus communis]
12 Hb_002400_180 0.074901787 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000100_070 0.0751393531 - - PREDICTED: pre-mRNA-splicing factor ISY1 homolog [Jatropha curcas]
14 Hb_011942_080 0.0808025956 - - PREDICTED: ubiquitin receptor RAD23b-like [Gossypium raimondii]
15 Hb_000342_110 0.0809745648 - - PREDICTED: uncharacterized protein LOC105638174 [Jatropha curcas]
16 Hb_023001_020 0.0810066482 - - PREDICTED: mitochondrial succinate-fumarate transporter 1 [Jatropha curcas]
17 Hb_000236_320 0.0813307427 - - PREDICTED: ER membrane protein complex subunit 8/9 homolog [Jatropha curcas]
18 Hb_005245_130 0.0817570799 - - PREDICTED: uncharacterized protein LOC105643730 [Jatropha curcas]
19 Hb_001014_010 0.0820392723 - - PREDICTED: uncharacterized protein LOC105647311 [Jatropha curcas]
20 Hb_171900_100 0.0823339899 - - PREDICTED: putative uncharacterized protein DDB_G0270496 [Jatropha curcas]

Gene co-expression network

sample Hb_002007_350 Hb_002007_350 Hb_009265_080 Hb_009265_080 Hb_002007_350--Hb_009265_080 Hb_008253_010 Hb_008253_010 Hb_002007_350--Hb_008253_010 Hb_004678_060 Hb_004678_060 Hb_002007_350--Hb_004678_060 Hb_007590_080 Hb_007590_080 Hb_002007_350--Hb_007590_080 Hb_000803_300 Hb_000803_300 Hb_002007_350--Hb_000803_300 Hb_003656_160 Hb_003656_160 Hb_002007_350--Hb_003656_160 Hb_009265_080--Hb_008253_010 Hb_009265_080--Hb_004678_060 Hb_002400_180 Hb_002400_180 Hb_009265_080--Hb_002400_180 Hb_009265_080--Hb_000803_300 Hb_004195_280 Hb_004195_280 Hb_009265_080--Hb_004195_280 Hb_008253_010--Hb_004678_060 Hb_007336_020 Hb_007336_020 Hb_008253_010--Hb_007336_020 Hb_008253_010--Hb_007590_080 Hb_134364_010 Hb_134364_010 Hb_008253_010--Hb_134364_010 Hb_004678_060--Hb_002400_180 Hb_004678_060--Hb_003656_160 Hb_003006_060 Hb_003006_060 Hb_004678_060--Hb_003006_060 Hb_007590_080--Hb_007336_020 Hb_007894_140 Hb_007894_140 Hb_007590_080--Hb_007894_140 Hb_000100_070 Hb_000100_070 Hb_007590_080--Hb_000100_070 Hb_007590_080--Hb_000803_300 Hb_002097_090 Hb_002097_090 Hb_000803_300--Hb_002097_090 Hb_000803_300--Hb_002400_180 Hb_000522_090 Hb_000522_090 Hb_000803_300--Hb_000522_090 Hb_005245_130 Hb_005245_130 Hb_000803_300--Hb_005245_130 Hb_000139_250 Hb_000139_250 Hb_000803_300--Hb_000139_250 Hb_002301_220 Hb_002301_220 Hb_003656_160--Hb_002301_220 Hb_000343_210 Hb_000343_210 Hb_003656_160--Hb_000343_210 Hb_046615_020 Hb_046615_020 Hb_003656_160--Hb_046615_020 Hb_003656_160--Hb_002400_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
85.6768 30.9178 29.9175 17.0815 74.8974 66.5399
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
54.9926 30.6802 37.235 28.6485 19.193

CAGE analysis