Hb_002010_050

Information

Type -
Description -
Location Contig2010: 28191-28955
Sequence    

Annotation

kegg
ID rcu:RCOM_1341360
description hypothetical protein
nr
ID XP_002515114.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RMX5
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1341360 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002010_050 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000808_260 0.1737735677 - - hypothetical protein RCOM_1434920 [Ricinus communis]
3 Hb_119327_010 0.1763629605 - - hypothetical protein POPTR_0075s00200g, partial [Populus trichocarpa]
4 Hb_001556_020 0.1779151048 desease resistance Gene Name: NB-ARC Disease resistance protein RPM1, putative [Ricinus communis]
5 Hb_000203_210 0.1881609316 - - PREDICTED: uncharacterized protein LOC105040619 isoform X3 [Elaeis guineensis]
6 Hb_056196_010 0.1929657257 - - PREDICTED: uncharacterized protein LOC105108358 [Populus euphratica]
7 Hb_000453_280 0.1936800773 - - negative cofactor 2 transcriptional co-repressor, putative [Ricinus communis]
8 Hb_019837_010 0.1969457421 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000594_150 0.2042947427 - - PREDICTED: serine/threonine-protein kinase STN7, chloroplastic-like isoform X1 [Nelumbo nucifera]
10 Hb_000923_100 0.2065519442 - - chloride channel clc, putative [Ricinus communis]
11 Hb_028285_020 0.2068097332 transcription factor TF Family: C2C2-CO-like zinc finger protein, putative [Ricinus communis]
12 Hb_001619_090 0.2082254425 - - heat shock protein binding protein, putative [Ricinus communis]
13 Hb_134932_010 0.2098769063 - - PREDICTED: wall-associated receptor kinase-like 1, partial [Populus euphratica]
14 Hb_001213_030 0.214752702 - - PAR1 protein [Theobroma cacao]
15 Hb_000092_120 0.2149043871 - - PREDICTED: non-structural maintenance of chromosomes element 4 homolog A-like [Populus euphratica]
16 Hb_002835_280 0.2150825793 - - PREDICTED: L-type lectin-domain containing receptor kinase S.1 [Jatropha curcas]
17 Hb_002999_140 0.2164270116 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
18 Hb_004767_020 0.2168407344 - - Lysosomal Pro-X carboxypeptidase, putative [Ricinus communis]
19 Hb_002983_110 0.2209746455 - - PREDICTED: uncharacterized protein LOC105634780 [Jatropha curcas]
20 Hb_002783_140 0.2219607052 - - PREDICTED: uncharacterized protein LOC105635332 [Jatropha curcas]

Gene co-expression network

sample Hb_002010_050 Hb_002010_050 Hb_000808_260 Hb_000808_260 Hb_002010_050--Hb_000808_260 Hb_119327_010 Hb_119327_010 Hb_002010_050--Hb_119327_010 Hb_001556_020 Hb_001556_020 Hb_002010_050--Hb_001556_020 Hb_000203_210 Hb_000203_210 Hb_002010_050--Hb_000203_210 Hb_056196_010 Hb_056196_010 Hb_002010_050--Hb_056196_010 Hb_000453_280 Hb_000453_280 Hb_002010_050--Hb_000453_280 Hb_004976_080 Hb_004976_080 Hb_000808_260--Hb_004976_080 Hb_019837_010 Hb_019837_010 Hb_000808_260--Hb_019837_010 Hb_000594_150 Hb_000594_150 Hb_000808_260--Hb_000594_150 Hb_004907_070 Hb_004907_070 Hb_000808_260--Hb_004907_070 Hb_000072_240 Hb_000072_240 Hb_000808_260--Hb_000072_240 Hb_003126_010 Hb_003126_010 Hb_000808_260--Hb_003126_010 Hb_031201_010 Hb_031201_010 Hb_119327_010--Hb_031201_010 Hb_004767_020 Hb_004767_020 Hb_119327_010--Hb_004767_020 Hb_008494_090 Hb_008494_090 Hb_119327_010--Hb_008494_090 Hb_119327_010--Hb_000203_210 Hb_004864_010 Hb_004864_010 Hb_119327_010--Hb_004864_010 Hb_007205_020 Hb_007205_020 Hb_119327_010--Hb_007205_020 Hb_000417_410 Hb_000417_410 Hb_001556_020--Hb_000417_410 Hb_001556_020--Hb_000453_280 Hb_000522_010 Hb_000522_010 Hb_001556_020--Hb_000522_010 Hb_002783_140 Hb_002783_140 Hb_001556_020--Hb_002783_140 Hb_003517_100 Hb_003517_100 Hb_001556_020--Hb_003517_100 Hb_000027_100 Hb_000027_100 Hb_001556_020--Hb_000027_100 Hb_067664_010 Hb_067664_010 Hb_000203_210--Hb_067664_010 Hb_000203_210--Hb_008494_090 Hb_000203_210--Hb_000522_010 Hb_000032_600 Hb_000032_600 Hb_000203_210--Hb_000032_600 Hb_000386_050 Hb_000386_050 Hb_000203_210--Hb_000386_050 Hb_002716_110 Hb_002716_110 Hb_056196_010--Hb_002716_110 Hb_000679_030 Hb_000679_030 Hb_056196_010--Hb_000679_030 Hb_001014_020 Hb_001014_020 Hb_056196_010--Hb_001014_020 Hb_074109_010 Hb_074109_010 Hb_056196_010--Hb_074109_010 Hb_019762_060 Hb_019762_060 Hb_056196_010--Hb_019762_060 Hb_000018_140 Hb_000018_140 Hb_056196_010--Hb_000018_140 Hb_001386_020 Hb_001386_020 Hb_000453_280--Hb_001386_020 Hb_002383_050 Hb_002383_050 Hb_000453_280--Hb_002383_050 Hb_000175_270 Hb_000175_270 Hb_000453_280--Hb_000175_270 Hb_000753_140 Hb_000753_140 Hb_000453_280--Hb_000753_140 Hb_000453_280--Hb_000808_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.246332 0.190444 0.106709 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0716454 0.0563311 0 0.0685122 0.225111

CAGE analysis