Hb_002010_080

Information

Type -
Description -
Location Contig2010: 41880-59976
Sequence    

Annotation

kegg
ID pop:POPTR_0017s02660g
description hypothetical protein
nr
ID XP_012071320.1
description PREDICTED: probable receptor-like protein kinase At1g11050 [Jatropha curcas]
swissprot
ID O04086
description Probable receptor-like protein kinase At1g11050 OS=Arabidopsis thaliana GN=At1g11050 PE=2 SV=1
trembl
ID A0A067KV51
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05005 PE=3 SV=1
Gene Ontology
ID GO:0005622
description kinase family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20434: 43451-43772
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002010_080 0.0 - - PREDICTED: probable receptor-like protein kinase At1g11050 [Jatropha curcas]
2 Hb_007102_010 0.1036368887 - - Granule-bound starch synthase 1, chloroplastic/amyloplastic [Gossypium arboreum]
3 Hb_004724_300 0.1117281068 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 90-like [Jatropha curcas]
4 Hb_001821_050 0.1189362322 - - hypothetical protein CICLE_v10032084mg [Citrus clementina]
5 Hb_002375_080 0.1224523969 - - conserved hypothetical protein [Ricinus communis]
6 Hb_004837_110 0.1300642181 - - PREDICTED: MATE efflux family protein 1 isoform X1 [Jatropha curcas]
7 Hb_012799_040 0.134841235 - - PREDICTED: transmembrane ascorbate ferrireductase 1 [Jatropha curcas]
8 Hb_183025_010 0.1350505538 - - PREDICTED: E3 ubiquitin-protein ligase RMA1H1 [Jatropha curcas]
9 Hb_001677_120 0.1372958908 - - PREDICTED: receptor-like protein 12 [Jatropha curcas]
10 Hb_001147_030 0.1376797781 - - hypothetical protein JCGZ_14809 [Jatropha curcas]
11 Hb_000656_260 0.1412466495 - - PREDICTED: uncharacterized protein LOC105631376 [Jatropha curcas]
12 Hb_033187_020 0.1420910911 - - hypothetical protein CARUB_v10004250mg, partial [Capsella rubella]
13 Hb_000140_220 0.1426423634 transcription factor TF Family: WRKY PREDICTED: WRKY transcription factor 22 [Jatropha curcas]
14 Hb_009557_080 0.1436426712 - - PREDICTED: glutaredoxin-C9-like [Populus euphratica]
15 Hb_004393_030 0.1447848274 - - CBL-interacting protein kinase 6 [Populus trichocarpa]
16 Hb_007007_090 0.1448021497 - - phospholipase d beta, putative [Ricinus communis]
17 Hb_000365_340 0.1465322275 - - PREDICTED: uncharacterized protein LOC105649067 [Jatropha curcas]
18 Hb_000260_480 0.1486877672 transcription factor TF Family: GRAS PREDICTED: protein SCARECROW [Jatropha curcas]
19 Hb_002890_320 0.1494794834 - - PREDICTED: uncharacterized protein LOC105631579 [Jatropha curcas]
20 Hb_000313_100 0.1496471487 rubber biosynthesis Gene Name: CPT4 PREDICTED: rubber cis-polyprenyltransferase HRT2 [Jatropha curcas]

Gene co-expression network

sample Hb_002010_080 Hb_002010_080 Hb_007102_010 Hb_007102_010 Hb_002010_080--Hb_007102_010 Hb_004724_300 Hb_004724_300 Hb_002010_080--Hb_004724_300 Hb_001821_050 Hb_001821_050 Hb_002010_080--Hb_001821_050 Hb_002375_080 Hb_002375_080 Hb_002010_080--Hb_002375_080 Hb_004837_110 Hb_004837_110 Hb_002010_080--Hb_004837_110 Hb_012799_040 Hb_012799_040 Hb_002010_080--Hb_012799_040 Hb_007102_010--Hb_004837_110 Hb_007102_010--Hb_001821_050 Hb_002890_320 Hb_002890_320 Hb_007102_010--Hb_002890_320 Hb_007102_010--Hb_002375_080 Hb_007102_010--Hb_004724_300 Hb_004112_050 Hb_004112_050 Hb_007102_010--Hb_004112_050 Hb_004724_300--Hb_001821_050 Hb_134022_010 Hb_134022_010 Hb_004724_300--Hb_134022_010 Hb_002725_080 Hb_002725_080 Hb_004724_300--Hb_002725_080 Hb_004724_300--Hb_004112_050 Hb_001677_120 Hb_001677_120 Hb_004724_300--Hb_001677_120 Hb_001821_050--Hb_001677_120 Hb_001821_050--Hb_134022_010 Hb_001821_050--Hb_004837_110 Hb_001821_050--Hb_002375_080 Hb_007007_090 Hb_007007_090 Hb_002375_080--Hb_007007_090 Hb_002375_080--Hb_001677_120 Hb_002375_080--Hb_004837_110 Hb_002097_130 Hb_002097_130 Hb_002375_080--Hb_002097_130 Hb_004837_110--Hb_002890_320 Hb_000054_140 Hb_000054_140 Hb_004837_110--Hb_000054_140 Hb_028928_020 Hb_028928_020 Hb_004837_110--Hb_028928_020 Hb_000656_260 Hb_000656_260 Hb_012799_040--Hb_000656_260 Hb_000032_090 Hb_000032_090 Hb_012799_040--Hb_000032_090 Hb_004393_030 Hb_004393_030 Hb_012799_040--Hb_004393_030 Hb_036492_020 Hb_036492_020 Hb_012799_040--Hb_036492_020 Hb_001660_130 Hb_001660_130 Hb_012799_040--Hb_001660_130 Hb_029584_110 Hb_029584_110 Hb_012799_040--Hb_029584_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0246764 0.506604 0.263098 0.230387 0 0.00930451
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0576479 0.24517

CAGE analysis