Hb_002013_020

Information

Type -
Description -
Location Contig2013: 42831-51163
Sequence    

Annotation

kegg
ID pop:POPTR_0003s08770g
description ubiquitin family protein
nr
ID XP_012081589.1
description PREDICTED: uncharacterized protein LOC105641613 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K112
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19318 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20444: 42825-51115
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002013_020 0.0 - - PREDICTED: uncharacterized protein LOC105641613 [Jatropha curcas]
2 Hb_004052_080 0.0548498804 - - conserved hypothetical protein [Ricinus communis]
3 Hb_003513_010 0.0599163503 - - Structural maintenance of chromosome 1 protein, putative [Ricinus communis]
4 Hb_001456_060 0.0612668584 - - hypothetical protein JCGZ_17090 [Jatropha curcas]
5 Hb_001163_050 0.0645003959 - - PREDICTED: histone deacetylase 9 [Jatropha curcas]
6 Hb_032202_140 0.0645547509 - - PREDICTED: flap endonuclease GEN-like 1 [Jatropha curcas]
7 Hb_002876_230 0.0651530545 - - PREDICTED: uncharacterized protein LOC105633933 [Jatropha curcas]
8 Hb_000137_040 0.0658294919 - - aspartyl-tRNA synthetase, putative [Ricinus communis]
9 Hb_007007_120 0.0678908771 - - PREDICTED: lysophospholipid acyltransferase LPEAT2 isoform X1 [Jatropha curcas]
10 Hb_000205_190 0.0683394685 transcription factor TF Family: G2-like DNA binding protein, putative [Ricinus communis]
11 Hb_000866_260 0.0684171836 - - PREDICTED: F-box/kelch-repeat protein SKIP4 isoform X1 [Jatropha curcas]
12 Hb_003416_010 0.0700190863 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 13 homolog B [Malus domestica]
13 Hb_014834_150 0.0719830763 - - PREDICTED: phosphatidylserine decarboxylase proenzyme 1, mitochondrial isoform X1 [Jatropha curcas]
14 Hb_001357_350 0.072453171 - - conserved hypothetical protein [Ricinus communis]
15 Hb_002235_250 0.0725980959 - - PREDICTED: cystathionine gamma-synthase 1, chloroplastic [Jatropha curcas]
16 Hb_000753_240 0.0729642275 - - PREDICTED: ADP,ATP carrier protein ER-ANT1 [Jatropha curcas]
17 Hb_109980_010 0.0733777878 - - PREDICTED: uncharacterized protein LOC105647182 isoform X1 [Jatropha curcas]
18 Hb_001142_030 0.0735361056 - - PREDICTED: uncharacterized protein LOC105640023 [Jatropha curcas]
19 Hb_007657_010 0.0738083152 - - ATP binding protein, putative [Ricinus communis]
20 Hb_000883_020 0.0740898415 - - PREDICTED: casein kinase II subunit beta-like isoform X5 [Jatropha curcas]

Gene co-expression network

sample Hb_002013_020 Hb_002013_020 Hb_004052_080 Hb_004052_080 Hb_002013_020--Hb_004052_080 Hb_003513_010 Hb_003513_010 Hb_002013_020--Hb_003513_010 Hb_001456_060 Hb_001456_060 Hb_002013_020--Hb_001456_060 Hb_001163_050 Hb_001163_050 Hb_002013_020--Hb_001163_050 Hb_032202_140 Hb_032202_140 Hb_002013_020--Hb_032202_140 Hb_002876_230 Hb_002876_230 Hb_002013_020--Hb_002876_230 Hb_007007_120 Hb_007007_120 Hb_004052_080--Hb_007007_120 Hb_000339_040 Hb_000339_040 Hb_004052_080--Hb_000339_040 Hb_004052_080--Hb_003513_010 Hb_004052_080--Hb_002876_230 Hb_003428_010 Hb_003428_010 Hb_004052_080--Hb_003428_010 Hb_003861_060 Hb_003861_060 Hb_004052_080--Hb_003861_060 Hb_000137_040 Hb_000137_040 Hb_003513_010--Hb_000137_040 Hb_014834_150 Hb_014834_150 Hb_003513_010--Hb_014834_150 Hb_000869_020 Hb_000869_020 Hb_003513_010--Hb_000869_020 Hb_003513_010--Hb_003861_060 Hb_003513_010--Hb_007007_120 Hb_009911_030 Hb_009911_030 Hb_001456_060--Hb_009911_030 Hb_001456_060--Hb_000339_040 Hb_004994_010 Hb_004994_010 Hb_001456_060--Hb_004994_010 Hb_001456_060--Hb_004052_080 Hb_001456_060--Hb_002876_230 Hb_005867_070 Hb_005867_070 Hb_001456_060--Hb_005867_070 Hb_000331_550 Hb_000331_550 Hb_001163_050--Hb_000331_550 Hb_003125_120 Hb_003125_120 Hb_001163_050--Hb_003125_120 Hb_000373_070 Hb_000373_070 Hb_001163_050--Hb_000373_070 Hb_001142_030 Hb_001142_030 Hb_001163_050--Hb_001142_030 Hb_003001_080 Hb_003001_080 Hb_001163_050--Hb_003001_080 Hb_008453_140 Hb_008453_140 Hb_001163_050--Hb_008453_140 Hb_002600_020 Hb_002600_020 Hb_032202_140--Hb_002600_020 Hb_032202_140--Hb_001163_050 Hb_032202_140--Hb_003001_080 Hb_032202_140--Hb_001456_060 Hb_011995_010 Hb_011995_010 Hb_032202_140--Hb_011995_010 Hb_002876_230--Hb_000339_040 Hb_002876_230--Hb_007007_120 Hb_002876_230--Hb_009911_030 Hb_000331_110 Hb_000331_110 Hb_002876_230--Hb_000331_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.7578 10.9867 18.798 12.0634 16.0019 15.2754
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.0162 18.9214 15.6518 11.7081 14.9293

CAGE analysis