Hb_002013_030

Information

Type -
Description -
Location Contig2013: 45057-47845
Sequence    

Annotation

kegg
ID bvg:104893812
description uncharacterized LOC104893812
nr
ID XP_010520633.1
description PREDICTED: uncharacterized protein LOC104799692 [Tarenaya hassleriana]
swissprot
ID -
description -
trembl
ID M7Z9S0
description Cysteine-rich receptor-like protein kinase 26 OS=Triticum urartu GN=TRIUR3_32029 PE=4 SV=1
Gene Ontology
ID GO:0016772
description craniofacial development protein 2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 048_P17r.ab1: 44480-51029

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002013_030 0.0 - - PREDICTED: uncharacterized protein LOC104799692 [Tarenaya hassleriana]
2 Hb_067472_010 0.1165135021 - - Uncharacterized protein TCM_024268 [Theobroma cacao]
3 Hb_116784_020 0.1219669147 - - PREDICTED: uncharacterized protein LOC104898613 [Beta vulgaris subsp. vulgaris]
4 Hb_001366_260 0.1227349182 - - T4.15 [Malus x robusta]
5 Hb_007543_020 0.130277763 - - PREDICTED: uncharacterized protein LOC104229533, partial [Nicotiana sylvestris]
6 Hb_011649_030 0.1340477337 - - hypothetical protein [Vitis hybrid cultivar]
7 Hb_000820_100 0.1345893584 - - RNA-directed DNA polymerase [Arachis hypogaea]
8 Hb_000173_110 0.1375636141 - - putative RNA-directed DNA polymerase (Reverse transcriptase) [Malus domestica]
9 Hb_011472_050 0.1476687662 - - -
10 Hb_001468_040 0.1534060323 - - Uncharacterized protein TCM_024268 [Theobroma cacao]
11 Hb_001385_070 0.1568497878 - - hypothetical protein VITISV_019194 [Vitis vinifera]
12 Hb_000352_060 0.1577391158 - - RNA-directed DNA polymerase [Arachis hypogaea]
13 Hb_002030_050 0.1582858238 - - classical arabinogalactan protein 7 precursor [Jatropha curcas]
14 Hb_009434_060 0.1601988222 - - T4.15 [Malus x robusta]
15 Hb_010565_030 0.1607907564 - - hypothetical protein VITISV_006810 [Vitis vinifera]
16 Hb_127552_050 0.1669391542 - - hypothetical protein VITISV_030752 [Vitis vinifera]
17 Hb_142522_040 0.1683030365 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
18 Hb_006940_020 0.1695503508 - - polyprotein [Oryza australiensis]
19 Hb_000123_340 0.1700445676 - - PREDICTED: uncharacterized protein LOC105789586 [Gossypium raimondii]
20 Hb_000574_330 0.1705001507 - - PREDICTED: clustered mitochondria protein homolog [Jatropha curcas]

Gene co-expression network

sample Hb_002013_030 Hb_002013_030 Hb_067472_010 Hb_067472_010 Hb_002013_030--Hb_067472_010 Hb_116784_020 Hb_116784_020 Hb_002013_030--Hb_116784_020 Hb_001366_260 Hb_001366_260 Hb_002013_030--Hb_001366_260 Hb_007543_020 Hb_007543_020 Hb_002013_030--Hb_007543_020 Hb_011649_030 Hb_011649_030 Hb_002013_030--Hb_011649_030 Hb_000820_100 Hb_000820_100 Hb_002013_030--Hb_000820_100 Hb_067472_010--Hb_116784_020 Hb_067472_010--Hb_001366_260 Hb_001468_040 Hb_001468_040 Hb_067472_010--Hb_001468_040 Hb_011472_050 Hb_011472_050 Hb_067472_010--Hb_011472_050 Hb_067472_010--Hb_000820_100 Hb_116784_020--Hb_001366_260 Hb_000352_060 Hb_000352_060 Hb_116784_020--Hb_000352_060 Hb_116784_020--Hb_001468_040 Hb_000027_230 Hb_000027_230 Hb_116784_020--Hb_000027_230 Hb_116784_020--Hb_000820_100 Hb_001366_260--Hb_000820_100 Hb_001366_260--Hb_007543_020 Hb_000173_110 Hb_000173_110 Hb_001366_260--Hb_000173_110 Hb_005092_090 Hb_005092_090 Hb_001366_260--Hb_005092_090 Hb_007543_020--Hb_000820_100 Hb_007543_020--Hb_116784_020 Hb_009434_060 Hb_009434_060 Hb_007543_020--Hb_009434_060 Hb_000060_130 Hb_000060_130 Hb_007543_020--Hb_000060_130 Hb_000123_340 Hb_000123_340 Hb_007543_020--Hb_000123_340 Hb_011649_030--Hb_000352_060 Hb_003291_030 Hb_003291_030 Hb_011649_030--Hb_003291_030 Hb_001385_070 Hb_001385_070 Hb_011649_030--Hb_001385_070 Hb_127552_050 Hb_127552_050 Hb_011649_030--Hb_127552_050 Hb_041813_040 Hb_041813_040 Hb_011649_030--Hb_041813_040 Hb_000574_330 Hb_000574_330 Hb_011649_030--Hb_000574_330 Hb_004520_010 Hb_004520_010 Hb_000820_100--Hb_004520_010 Hb_000820_100--Hb_000173_110 Hb_000820_100--Hb_000123_340
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0288661 0.358815 0.132519 0.0986672 0.0279807 0.0836357
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.186056 1.13474

CAGE analysis