Hb_002014_020

Information

Type -
Description -
Location Contig2014: 43076-47792
Sequence    

Annotation

kegg
ID tcc:TCM_037869
description Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein isoform 2
nr
ID XP_012076702.1
description PREDICTED: protein Mpv17 isoform X2 [Jatropha curcas]
swissprot
ID Q54XX9
description PXMP2/4 family protein 2 OS=Dictyostelium discoideum GN=DDB_G0278529 PE=3 SV=1
trembl
ID A0A067KC03
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07253 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20451: 45661-47574
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002014_020 0.0 - - PREDICTED: protein Mpv17 isoform X2 [Jatropha curcas]
2 Hb_000236_040 0.0719334826 - - PREDICTED: uncharacterized protein LOC105633150 isoform X1 [Jatropha curcas]
3 Hb_031862_100 0.0725052026 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
4 Hb_004889_010 0.0746667721 - - Vacuolar protein sorting-associated protein-like protein [Medicago truncatula]
5 Hb_034380_020 0.0798514439 - - PREDICTED: phosphoglycerate mutase-like [Jatropha curcas]
6 Hb_001218_030 0.0806136481 - - PREDICTED: uncharacterized protein LOC105630612 [Jatropha curcas]
7 Hb_001828_150 0.0811589567 - - PREDICTED: cytochrome c1-2, heme protein, mitochondrial [Jatropha curcas]
8 Hb_005306_180 0.0816599942 rubber biosynthesis Gene Name: Dihydrolipoyllysine-residue acetyltransferase component 2 of pyruvate dehydrogenase complex PREDICTED: dihydrolipoyllysine-residue acetyltransferase component 2 of pyruvate dehydrogenase complex, mitochondrial-like [Jatropha curcas]
9 Hb_006420_080 0.0817395862 rubber biosynthesis Gene Name: Pyruvate dehydrogenase PREDICTED: pyruvate dehydrogenase E1 component subunit alpha-1, mitochondrial isoform X1 [Jatropha curcas]
10 Hb_005054_210 0.0819842142 - - hypothetical protein PRUPE_ppa026456mg [Prunus persica]
11 Hb_005551_040 0.0827591351 - - PREDICTED: protein CHROMOSOME TRANSMISSION FIDELITY 7 [Jatropha curcas]
12 Hb_000460_030 0.0840183646 - - 4-hydroxybenzoate octaprenyltransferase, putative [Ricinus communis]
13 Hb_000003_230 0.0841345101 - - PREDICTED: FAD synthetase 2, chloroplastic [Jatropha curcas]
14 Hb_000483_260 0.0842714143 - - PREDICTED: dihydroorotase, mitochondrial isoform X1 [Populus euphratica]
15 Hb_001489_080 0.0847909543 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
16 Hb_000174_210 0.084911811 - - latex cyanogenic beta glucosidase [Hevea brasiliensis]
17 Hb_006907_130 0.0862986671 - - unnamed protein product [Coffea canephora]
18 Hb_004767_080 0.0865824211 - - PREDICTED: mitochondrial ATPase complex subunit ATP10 isoform X1 [Jatropha curcas]
19 Hb_000363_360 0.0868388971 - - hypothetical protein PRUPE_ppa009146mg [Prunus persica]
20 Hb_000329_760 0.087328586 - - PREDICTED: probable mitochondrial import inner membrane translocase subunit TIM21 [Jatropha curcas]

Gene co-expression network

sample Hb_002014_020 Hb_002014_020 Hb_000236_040 Hb_000236_040 Hb_002014_020--Hb_000236_040 Hb_031862_100 Hb_031862_100 Hb_002014_020--Hb_031862_100 Hb_004889_010 Hb_004889_010 Hb_002014_020--Hb_004889_010 Hb_034380_020 Hb_034380_020 Hb_002014_020--Hb_034380_020 Hb_001218_030 Hb_001218_030 Hb_002014_020--Hb_001218_030 Hb_001828_150 Hb_001828_150 Hb_002014_020--Hb_001828_150 Hb_000827_050 Hb_000827_050 Hb_000236_040--Hb_000827_050 Hb_000205_090 Hb_000205_090 Hb_000236_040--Hb_000205_090 Hb_001633_050 Hb_001633_050 Hb_000236_040--Hb_001633_050 Hb_003304_020 Hb_003304_020 Hb_000236_040--Hb_003304_020 Hb_004058_030 Hb_004058_030 Hb_000236_040--Hb_004058_030 Hb_001386_040 Hb_001386_040 Hb_031862_100--Hb_001386_040 Hb_015934_070 Hb_015934_070 Hb_031862_100--Hb_015934_070 Hb_001314_050 Hb_001314_050 Hb_031862_100--Hb_001314_050 Hb_001189_070 Hb_001189_070 Hb_031862_100--Hb_001189_070 Hb_006907_130 Hb_006907_130 Hb_031862_100--Hb_006907_130 Hb_005914_170 Hb_005914_170 Hb_031862_100--Hb_005914_170 Hb_005551_040 Hb_005551_040 Hb_004889_010--Hb_005551_040 Hb_003697_040 Hb_003697_040 Hb_004889_010--Hb_003697_040 Hb_009615_070 Hb_009615_070 Hb_004889_010--Hb_009615_070 Hb_003349_090 Hb_003349_090 Hb_004889_010--Hb_003349_090 Hb_004889_010--Hb_034380_020 Hb_089032_030 Hb_089032_030 Hb_004889_010--Hb_089032_030 Hb_034380_020--Hb_005551_040 Hb_001489_080 Hb_001489_080 Hb_034380_020--Hb_001489_080 Hb_007416_060 Hb_007416_060 Hb_034380_020--Hb_007416_060 Hb_034380_020--Hb_003697_040 Hb_000853_150 Hb_000853_150 Hb_001218_030--Hb_000853_150 Hb_000920_200 Hb_000920_200 Hb_001218_030--Hb_000920_200 Hb_001218_030--Hb_001828_150 Hb_000200_020 Hb_000200_020 Hb_001218_030--Hb_000200_020 Hb_001123_040 Hb_001123_040 Hb_001218_030--Hb_001123_040 Hb_000483_260 Hb_000483_260 Hb_001218_030--Hb_000483_260 Hb_006573_190 Hb_006573_190 Hb_001828_150--Hb_006573_190 Hb_008841_020 Hb_008841_020 Hb_001828_150--Hb_008841_020 Hb_001828_150--Hb_000853_150 Hb_121729_010 Hb_121729_010 Hb_001828_150--Hb_121729_010 Hb_000381_120 Hb_000381_120 Hb_001828_150--Hb_000381_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.60554 2.15509 5.43419 5.73505 3.27762 4.28746
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.76559 9.04146 8.13347 7.75876 4.13079

CAGE analysis