Hb_002014_030

Information

Type -
Description -
Location Contig2014: 59288-63734
Sequence    

Annotation

kegg
ID pop:POPTR_0018s08820g
description POPTRDRAFT_261872; hypothetical protein
nr
ID KDP33680.1
description hypothetical protein JCGZ_07251 [Jatropha curcas]
swissprot
ID A5ERG8
description tRNA(Ile)-lysidine synthase OS=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) GN=tilS PE=3 SV=1
trembl
ID A0A067KN32
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07251 PE=3 SV=1
Gene Ontology
ID GO:0005737
description trna -lysidine synthase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20453: 59272-61247 , PASA_asmbl_20454: 61474-62253 , PASA_asmbl_20455: 62265-63078
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002014_030 0.0 - - hypothetical protein JCGZ_07251 [Jatropha curcas]
2 Hb_001366_180 0.0705742087 - - PREDICTED: translocase of chloroplast 33, chloroplastic-like [Jatropha curcas]
3 Hb_006274_030 0.0755168016 - - F-box and wd40 domain protein, putative [Ricinus communis]
4 Hb_000289_110 0.0773304611 - - PREDICTED: cysteine synthase-like [Musa acuminata subsp. malaccensis]
5 Hb_017987_030 0.0791218446 - - PREDICTED: uncharacterized protein LOC105630796 [Jatropha curcas]
6 Hb_002811_130 0.079328578 - - Zeta-carotene desaturase, chloroplast precursor, putative [Ricinus communis]
7 Hb_018272_020 0.080571439 - - PREDICTED: small glutamine-rich tetratricopeptide repeat-containing protein alpha [Jatropha curcas]
8 Hb_000053_020 0.0834888694 - - F-box and wd40 domain protein, putative [Ricinus communis]
9 Hb_001189_070 0.0862812214 - - PREDICTED: ribosome production factor 1 [Jatropha curcas]
10 Hb_001766_050 0.0881488482 - - PREDICTED: pentatricopeptide repeat-containing protein At3g29290 [Jatropha curcas]
11 Hb_000483_300 0.0883431998 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic [Populus euphratica]
12 Hb_008841_020 0.0891525787 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105631075 isoform X1 [Jatropha curcas]
13 Hb_005976_080 0.0908245353 - - PREDICTED: RNA-binding protein Musashi homolog 1 [Jatropha curcas]
14 Hb_003020_260 0.0909497786 - - PREDICTED: metal tolerance protein B [Jatropha curcas]
15 Hb_189216_020 0.0914007115 - - PREDICTED: translin [Jatropha curcas]
16 Hb_000172_580 0.0916331579 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
17 Hb_000479_250 0.0922842095 - - PREDICTED: uncharacterized protein LOC105644121 [Jatropha curcas]
18 Hb_000310_090 0.0925073782 - - 3-oxoacyl-[acyl-carrier-protein] synthase 3 A, chloroplastic [Jatropha curcas]
19 Hb_003153_010 0.0928242069 - - PREDICTED: diacylglycerol kinase 3-like [Jatropha curcas]
20 Hb_000840_200 0.0930864505 - - PREDICTED: carbamoyl-phosphate synthase small chain, chloroplastic-like [Jatropha curcas]

Gene co-expression network

sample Hb_002014_030 Hb_002014_030 Hb_001366_180 Hb_001366_180 Hb_002014_030--Hb_001366_180 Hb_006274_030 Hb_006274_030 Hb_002014_030--Hb_006274_030 Hb_000289_110 Hb_000289_110 Hb_002014_030--Hb_000289_110 Hb_017987_030 Hb_017987_030 Hb_002014_030--Hb_017987_030 Hb_002811_130 Hb_002811_130 Hb_002014_030--Hb_002811_130 Hb_018272_020 Hb_018272_020 Hb_002014_030--Hb_018272_020 Hb_001366_180--Hb_006274_030 Hb_005144_050 Hb_005144_050 Hb_001366_180--Hb_005144_050 Hb_001366_180--Hb_000289_110 Hb_000479_250 Hb_000479_250 Hb_001366_180--Hb_000479_250 Hb_006478_020 Hb_006478_020 Hb_001366_180--Hb_006478_020 Hb_006274_030--Hb_000479_250 Hb_001971_010 Hb_001971_010 Hb_006274_030--Hb_001971_010 Hb_000053_020 Hb_000053_020 Hb_006274_030--Hb_000053_020 Hb_006274_030--Hb_006478_020 Hb_001006_020 Hb_001006_020 Hb_000289_110--Hb_001006_020 Hb_000289_110--Hb_002811_130 Hb_000289_110--Hb_005144_050 Hb_000337_050 Hb_000337_050 Hb_000289_110--Hb_000337_050 Hb_012055_030 Hb_012055_030 Hb_017987_030--Hb_012055_030 Hb_007192_070 Hb_007192_070 Hb_017987_030--Hb_007192_070 Hb_000110_250 Hb_000110_250 Hb_017987_030--Hb_000110_250 Hb_000840_200 Hb_000840_200 Hb_017987_030--Hb_000840_200 Hb_000075_040 Hb_000075_040 Hb_017987_030--Hb_000075_040 Hb_011716_130 Hb_011716_130 Hb_002811_130--Hb_011716_130 Hb_005847_060 Hb_005847_060 Hb_002811_130--Hb_005847_060 Hb_002811_130--Hb_006274_030 Hb_000061_210 Hb_000061_210 Hb_002811_130--Hb_000061_210 Hb_003020_260 Hb_003020_260 Hb_018272_020--Hb_003020_260 Hb_018272_020--Hb_001366_180 Hb_018272_020--Hb_000479_250 Hb_005976_080 Hb_005976_080 Hb_018272_020--Hb_005976_080 Hb_002758_010 Hb_002758_010 Hb_018272_020--Hb_002758_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.3393 1.63142 3.39052 3.48257 1.77924 3.36278
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.94886 5.38889 3.11443 3.26233 5.7019

CAGE analysis