Hb_002014_080

Information

Type -
Description -
Location Contig2014: 104369-112261
Sequence    

Annotation

kegg
ID rcu:RCOM_1052720
description Protein cbxX, chromosomal, putative
nr
ID XP_012076692.1
description PREDICTED: tankyrase-1 isoform X4 [Jatropha curcas]
swissprot
ID P51228
description Protein cfxQ homolog OS=Porphyra purpurea GN=cfxQ PE=3 SV=1
trembl
ID A0A067KN26
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07246 PE=4 SV=1
Gene Ontology
ID GO:0009507
description caseinolytic peptidase b protein homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20459: 104410-108768 , PASA_asmbl_20460: 107396-107618 , PASA_asmbl_20462: 109922-110964
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002014_080 0.0 - - PREDICTED: tankyrase-1 isoform X4 [Jatropha curcas]
2 Hb_024714_030 0.0676081569 - - PREDICTED: sm-like protein LSM4 [Jatropha curcas]
3 Hb_000012_090 0.0685424483 - - 3'-5' exonuclease, putative [Ricinus communis]
4 Hb_014568_030 0.0697832431 - - PREDICTED: F-box protein CPR30-like [Jatropha curcas]
5 Hb_000365_360 0.0743958288 - - PREDICTED: RING finger and transmembrane domain-containing protein 2 isoform X1 [Jatropha curcas]
6 Hb_000671_100 0.0789316529 - - hypothetical protein POPTR_0017s06410g [Populus trichocarpa]
7 Hb_002215_050 0.0792389316 - - protein phosphatase 2a, regulatory subunit, putative [Ricinus communis]
8 Hb_000077_050 0.0797261965 - - PREDICTED: elongation factor G-1, mitochondrial isoform X1 [Jatropha curcas]
9 Hb_003352_050 0.0804220328 - - PREDICTED: uncharacterized protein LOC105643709 [Jatropha curcas]
10 Hb_000078_130 0.0808341791 - - -
11 Hb_022137_060 0.0817276035 - - 1-acylglycerophosphocholine O-acyltransferase [Vernicia fordii]
12 Hb_000390_060 0.0828467588 - - PREDICTED: F-box/kelch-repeat protein At5g60570-like [Jatropha curcas]
13 Hb_005288_120 0.083405044 - - PREDICTED: uncharacterized protein LOC105647751 [Jatropha curcas]
14 Hb_005215_080 0.0838471984 - - PREDICTED: cyclin-D3-3 [Jatropha curcas]
15 Hb_001135_160 0.0849479701 - - PREDICTED: elongator complex protein 6 [Jatropha curcas]
16 Hb_000049_040 0.0869484786 - - PREDICTED: uncharacterized protein LOC105644475 [Jatropha curcas]
17 Hb_033491_010 0.0873402321 - - Phosphatidylinositol N-acetylglucosaminyltransferase subunit C, putative [Ricinus communis]
18 Hb_012760_170 0.0879922097 - - PREDICTED: la-related protein 1C-like isoform X1 [Jatropha curcas]
19 Hb_000599_120 0.0888341808 - - PREDICTED: putative E3 ubiquitin-protein ligase XBAT34 [Jatropha curcas]
20 Hb_011282_030 0.0894896214 - - PREDICTED: phosphatidylinositol/phosphatidylcholine transfer protein SFH8 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_002014_080 Hb_002014_080 Hb_024714_030 Hb_024714_030 Hb_002014_080--Hb_024714_030 Hb_000012_090 Hb_000012_090 Hb_002014_080--Hb_000012_090 Hb_014568_030 Hb_014568_030 Hb_002014_080--Hb_014568_030 Hb_000365_360 Hb_000365_360 Hb_002014_080--Hb_000365_360 Hb_000671_100 Hb_000671_100 Hb_002014_080--Hb_000671_100 Hb_002215_050 Hb_002215_050 Hb_002014_080--Hb_002215_050 Hb_024714_030--Hb_000671_100 Hb_003638_140 Hb_003638_140 Hb_024714_030--Hb_003638_140 Hb_024714_030--Hb_014568_030 Hb_024714_030--Hb_002215_050 Hb_035524_030 Hb_035524_030 Hb_024714_030--Hb_035524_030 Hb_028639_060 Hb_028639_060 Hb_000012_090--Hb_028639_060 Hb_006922_080 Hb_006922_080 Hb_000012_090--Hb_006922_080 Hb_003728_020 Hb_003728_020 Hb_000012_090--Hb_003728_020 Hb_003453_020 Hb_003453_020 Hb_000012_090--Hb_003453_020 Hb_003602_040 Hb_003602_040 Hb_000012_090--Hb_003602_040 Hb_000077_050 Hb_000077_050 Hb_014568_030--Hb_000077_050 Hb_001584_110 Hb_001584_110 Hb_014568_030--Hb_001584_110 Hb_001855_010 Hb_001855_010 Hb_014568_030--Hb_001855_010 Hb_011282_030 Hb_011282_030 Hb_014568_030--Hb_011282_030 Hb_098709_010 Hb_098709_010 Hb_000365_360--Hb_098709_010 Hb_000317_430 Hb_000317_430 Hb_000365_360--Hb_000317_430 Hb_001369_060 Hb_001369_060 Hb_000365_360--Hb_001369_060 Hb_000035_380 Hb_000035_380 Hb_000365_360--Hb_000035_380 Hb_118419_020 Hb_118419_020 Hb_000365_360--Hb_118419_020 Hb_010298_010 Hb_010298_010 Hb_000671_100--Hb_010298_010 Hb_000671_100--Hb_035524_030 Hb_000671_100--Hb_014568_030 Hb_009558_020 Hb_009558_020 Hb_000671_100--Hb_009558_020 Hb_002215_050--Hb_001369_060 Hb_002215_050--Hb_003638_140 Hb_033491_010 Hb_033491_010 Hb_002215_050--Hb_033491_010 Hb_000784_090 Hb_000784_090 Hb_002215_050--Hb_000784_090 Hb_001214_130 Hb_001214_130 Hb_002215_050--Hb_001214_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
40.5237 8.68641 4.71642 12.2642 43.748 57.1703
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
36.8932 20.5279 30.5852 12.7328 5.44016

CAGE analysis