Hb_002014_130

Information

Type -
Description -
Location Contig2014: 130933-131646
Sequence    

Annotation

kegg
ID rcu:RCOM_1052780
description hypothetical protein
nr
ID XP_002514305.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RKR1
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1052780 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002014_130 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_005291_020 0.0677200512 - - conserved hypothetical protein [Ricinus communis]
3 Hb_003580_020 0.0779120972 - - conserved hypothetical protein [Ricinus communis]
4 Hb_006717_060 0.079773712 - - PREDICTED: peroxidase 42 [Jatropha curcas]
5 Hb_000497_030 0.0801335748 - - -
6 Hb_000408_060 0.0830473102 - - hypothetical protein POPTR_0018s11360g [Populus trichocarpa]
7 Hb_009421_060 0.0968507955 - - PREDICTED: calmodulin-like protein 1 [Jatropha curcas]
8 Hb_005144_150 0.0993173646 - - hypothetical protein VITISV_013572 [Vitis vinifera]
9 Hb_000188_040 0.1018811772 - - PREDICTED: uncharacterized protein LOC105629522 [Jatropha curcas]
10 Hb_000115_200 0.102021438 - - PREDICTED: endonuclease 2 [Jatropha curcas]
11 Hb_000083_200 0.1021333706 - - conserved hypothetical protein [Ricinus communis]
12 Hb_003680_240 0.103390237 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g68400 [Jatropha curcas]
13 Hb_000462_120 0.10493409 transcription factor TF Family: PLATZ PREDICTED: uncharacterized protein LOC105642310 [Jatropha curcas]
14 Hb_003858_070 0.1051085863 - - PREDICTED: uncharacterized protein LOC105647879 [Jatropha curcas]
15 Hb_001584_270 0.1071605429 - - conserved hypothetical protein [Ricinus communis]
16 Hb_003849_170 0.1075846851 - - hypothetical protein JCGZ_17850 [Jatropha curcas]
17 Hb_006252_070 0.1091346644 - - hypothetical protein JCGZ_17254 [Jatropha curcas]
18 Hb_006153_140 0.1124202481 - - PREDICTED: adenine phosphoribosyltransferase 3 [Jatropha curcas]
19 Hb_000449_070 0.1130666049 - - unnamed protein product [Vitis vinifera]
20 Hb_006386_010 0.1132889887 - - PREDICTED: polygalacturonase QRT3 [Jatropha curcas]

Gene co-expression network

sample Hb_002014_130 Hb_002014_130 Hb_005291_020 Hb_005291_020 Hb_002014_130--Hb_005291_020 Hb_003580_020 Hb_003580_020 Hb_002014_130--Hb_003580_020 Hb_006717_060 Hb_006717_060 Hb_002014_130--Hb_006717_060 Hb_000497_030 Hb_000497_030 Hb_002014_130--Hb_000497_030 Hb_000408_060 Hb_000408_060 Hb_002014_130--Hb_000408_060 Hb_009421_060 Hb_009421_060 Hb_002014_130--Hb_009421_060 Hb_005291_020--Hb_003580_020 Hb_000462_120 Hb_000462_120 Hb_005291_020--Hb_000462_120 Hb_180518_010 Hb_180518_010 Hb_005291_020--Hb_180518_010 Hb_027577_010 Hb_027577_010 Hb_005291_020--Hb_027577_010 Hb_005291_020--Hb_000497_030 Hb_003580_020--Hb_000462_120 Hb_003580_020--Hb_006717_060 Hb_003580_020--Hb_000497_030 Hb_000699_220 Hb_000699_220 Hb_003580_020--Hb_000699_220 Hb_006717_060--Hb_000699_220 Hb_006717_060--Hb_000497_030 Hb_012114_090 Hb_012114_090 Hb_006717_060--Hb_012114_090 Hb_001349_040 Hb_001349_040 Hb_006717_060--Hb_001349_040 Hb_000336_120 Hb_000336_120 Hb_006717_060--Hb_000336_120 Hb_000497_030--Hb_000699_220 Hb_071079_040 Hb_071079_040 Hb_000497_030--Hb_071079_040 Hb_000497_030--Hb_001349_040 Hb_000083_200 Hb_000083_200 Hb_000497_030--Hb_000083_200 Hb_003090_220 Hb_003090_220 Hb_000408_060--Hb_003090_220 Hb_001818_010 Hb_001818_010 Hb_000408_060--Hb_001818_010 Hb_006153_140 Hb_006153_140 Hb_000408_060--Hb_006153_140 Hb_003680_240 Hb_003680_240 Hb_000408_060--Hb_003680_240 Hb_000866_130 Hb_000866_130 Hb_000408_060--Hb_000866_130 Hb_001579_160 Hb_001579_160 Hb_009421_060--Hb_001579_160 Hb_009421_060--Hb_000083_200 Hb_021596_050 Hb_021596_050 Hb_009421_060--Hb_021596_050 Hb_180088_010 Hb_180088_010 Hb_009421_060--Hb_180088_010 Hb_001500_020 Hb_001500_020 Hb_009421_060--Hb_001500_020 Hb_001541_170 Hb_001541_170 Hb_009421_060--Hb_001541_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.16292 3.85076 34.8408 0.0320065 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.43394 7.23837

CAGE analysis