Hb_002016_030

Information

Type -
Description -
Location Contig2016: 38145-39655
Sequence    

Annotation

kegg
ID rcu:RCOM_1439840
description hypothetical protein
nr
ID XP_002531879.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9T0W0
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1439840 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20492: 37710-39573
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002016_030 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000953_120 0.1470167549 - - -
3 Hb_009119_010 0.1542426413 - - -
4 Hb_041601_010 0.1754256458 - - -
5 Hb_000025_080 0.1762280363 - - -
6 Hb_011200_010 0.1821042276 - - -
7 Hb_010367_020 0.1923490747 - - hypothetical protein POPTR_0009s054801g, partial [Populus trichocarpa]
8 Hb_006162_020 0.1956437917 - - -
9 Hb_099298_010 0.1965921772 - - -
10 Hb_162090_010 0.1979693063 - - PREDICTED: uncharacterized protein LOC105642032 [Jatropha curcas]
11 Hb_006794_010 0.1982701805 - - elicitor-responsive protein [Hevea brasiliensis]
12 Hb_022614_010 0.2019606201 - - -
13 Hb_000034_090 0.2027961844 transcription factor TF Family: M-type MPF2-like, partial [Dunalia fasciculata]
14 Hb_005107_020 0.215414274 - - hypothetical protein JCGZ_25266 [Jatropha curcas]
15 Hb_002972_060 0.225920845 transcription factor TF Family: M-type mads box protein, putative [Ricinus communis]
16 Hb_017014_020 0.2298512221 - - -
17 Hb_021888_040 0.2368262085 - - PREDICTED: uncharacterized protein LOC103499290 isoform X2 [Cucumis melo]
18 Hb_000251_020 0.2372910497 - - hypothetical protein CISIN_1g028541mg [Citrus sinensis]
19 Hb_000270_540 0.2471540856 - - hypothetical protein JCGZ_11527 [Jatropha curcas]
20 Hb_005368_030 0.2480853723 - - -

Gene co-expression network

sample Hb_002016_030 Hb_002016_030 Hb_000953_120 Hb_000953_120 Hb_002016_030--Hb_000953_120 Hb_009119_010 Hb_009119_010 Hb_002016_030--Hb_009119_010 Hb_041601_010 Hb_041601_010 Hb_002016_030--Hb_041601_010 Hb_000025_080 Hb_000025_080 Hb_002016_030--Hb_000025_080 Hb_011200_010 Hb_011200_010 Hb_002016_030--Hb_011200_010 Hb_010367_020 Hb_010367_020 Hb_002016_030--Hb_010367_020 Hb_000953_120--Hb_041601_010 Hb_000953_120--Hb_009119_010 Hb_000953_120--Hb_000025_080 Hb_162090_010 Hb_162090_010 Hb_000953_120--Hb_162090_010 Hb_000034_090 Hb_000034_090 Hb_000953_120--Hb_000034_090 Hb_002972_060 Hb_002972_060 Hb_009119_010--Hb_002972_060 Hb_009119_010--Hb_000025_080 Hb_000270_540 Hb_000270_540 Hb_009119_010--Hb_000270_540 Hb_013040_010 Hb_013040_010 Hb_009119_010--Hb_013040_010 Hb_000251_020 Hb_000251_020 Hb_041601_010--Hb_000251_020 Hb_041601_010--Hb_000034_090 Hb_041601_010--Hb_162090_010 Hb_041601_010--Hb_000025_080 Hb_000025_080--Hb_162090_010 Hb_017014_020 Hb_017014_020 Hb_000025_080--Hb_017014_020 Hb_006794_010 Hb_006794_010 Hb_000025_080--Hb_006794_010 Hb_011200_010--Hb_006794_010 Hb_005107_020 Hb_005107_020 Hb_011200_010--Hb_005107_020 Hb_022614_010 Hb_022614_010 Hb_011200_010--Hb_022614_010 Hb_013394_100 Hb_013394_100 Hb_011200_010--Hb_013394_100 Hb_012675_080 Hb_012675_080 Hb_011200_010--Hb_012675_080 Hb_006162_020 Hb_006162_020 Hb_011200_010--Hb_006162_020 Hb_009803_010 Hb_009803_010 Hb_010367_020--Hb_009803_010 Hb_122741_010 Hb_122741_010 Hb_010367_020--Hb_122741_010 Hb_010367_020--Hb_009119_010 Hb_010367_020--Hb_000025_080 Hb_158296_010 Hb_158296_010 Hb_010367_020--Hb_158296_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.49575 0.167439 5.20556 480.366 2.90037 211.058
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
24.1224 44.2749 2.28061 8.70606 1.9762

CAGE analysis