Hb_002016_060

Information

Type -
Description -
Location Contig2016: 60544-73381
Sequence    

Annotation

kegg
ID pop:POPTR_0014s12560g
description POPTRDRAFT_834886; AAA-type ATPase family protein
nr
ID XP_012082733.1
description PREDICTED: uncharacterized protein LOC105642502 [Jatropha curcas]
swissprot
ID Q9D5T0
description ATPase family AAA domain-containing protein 1 OS=Mus musculus GN=Atad1 PE=1 SV=1
trembl
ID A0A067K7B0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13911 PE=3 SV=1
Gene Ontology
ID GO:0005524
description aaa-type atpase family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20494: 60752-73418
cDNA
(Sanger)
(ID:Location)		 007_M18.ab1: 71803-73346

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002016_060 0.0 - - PREDICTED: uncharacterized protein LOC105642502 [Jatropha curcas]
2 Hb_015183_100 0.081887784 - - PREDICTED: ankyrin repeat-containing protein At3g12360 [Jatropha curcas]
3 Hb_004310_040 0.0838206842 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000917_100 0.0842632598 - - PREDICTED: phosphoenolpyruvate carboxylase 4 [Jatropha curcas]
5 Hb_002005_120 0.087611129 - - PREDICTED: protein MEI2-like 5 [Jatropha curcas]
6 Hb_000866_080 0.1053710619 - - PREDICTED: signal peptide peptidase-like 4 isoform X1 [Jatropha curcas]
7 Hb_000059_020 0.1057299272 - - PREDICTED: F-box protein SKP2A [Jatropha curcas]
8 Hb_004195_120 0.1065288023 desease resistance Gene Name: NB-ARC Disease resistance protein RGA2, putative [Ricinus communis]
9 Hb_001699_150 0.1077648523 - - hypothetical protein POPTR_0009s13450g [Populus trichocarpa]
10 Hb_001341_160 0.1112214114 - - PREDICTED: E3 SUMO-protein ligase SIZ1 isoform X2 [Jatropha curcas]
11 Hb_000184_150 0.1140474152 - - PREDICTED: U-box domain-containing protein 15 [Jatropha curcas]
12 Hb_001414_040 0.1146597667 - - PREDICTED: RNA-dependent RNA polymerase 1-like isoform X1 [Jatropha curcas]
13 Hb_002045_250 0.1164968601 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP63 isoform X3 [Jatropha curcas]
14 Hb_002092_070 0.1181483525 - - PREDICTED: aluminum-activated malate transporter 9-like [Jatropha curcas]
15 Hb_007982_050 0.1183451423 - - PREDICTED: somatic embryogenesis receptor kinase 2-like [Jatropha curcas]
16 Hb_001373_160 0.118416159 - - hypothetical protein JCGZ_16907 [Jatropha curcas]
17 Hb_065500_030 0.1197804128 - - PREDICTED: probable E3 ubiquitin-protein ligase ARI7 [Jatropha curcas]
18 Hb_001492_040 0.1198714287 desease resistance Gene Name: NB-ARC conserved hypothetical protein [Ricinus communis]
19 Hb_014720_020 0.120791868 - - PREDICTED: serine/threonine-protein kinase ATM [Jatropha curcas]
20 Hb_000599_130 0.1208114426 - - PREDICTED: U-box domain-containing protein 3 [Jatropha curcas]

Gene co-expression network

sample Hb_002016_060 Hb_002016_060 Hb_015183_100 Hb_015183_100 Hb_002016_060--Hb_015183_100 Hb_004310_040 Hb_004310_040 Hb_002016_060--Hb_004310_040 Hb_000917_100 Hb_000917_100 Hb_002016_060--Hb_000917_100 Hb_002005_120 Hb_002005_120 Hb_002016_060--Hb_002005_120 Hb_000866_080 Hb_000866_080 Hb_002016_060--Hb_000866_080 Hb_000059_020 Hb_000059_020 Hb_002016_060--Hb_000059_020 Hb_003142_040 Hb_003142_040 Hb_015183_100--Hb_003142_040 Hb_001171_030 Hb_001171_030 Hb_015183_100--Hb_001171_030 Hb_011249_060 Hb_011249_060 Hb_015183_100--Hb_011249_060 Hb_002968_070 Hb_002968_070 Hb_015183_100--Hb_002968_070 Hb_012940_040 Hb_012940_040 Hb_015183_100--Hb_012940_040 Hb_001341_160 Hb_001341_160 Hb_015183_100--Hb_001341_160 Hb_004310_040--Hb_000866_080 Hb_004195_120 Hb_004195_120 Hb_004310_040--Hb_004195_120 Hb_010661_020 Hb_010661_020 Hb_004310_040--Hb_010661_020 Hb_004310_040--Hb_011249_060 Hb_004310_040--Hb_015183_100 Hb_000917_100--Hb_002005_120 Hb_000917_100--Hb_000866_080 Hb_000917_100--Hb_015183_100 Hb_002092_070 Hb_002092_070 Hb_000917_100--Hb_002092_070 Hb_001221_090 Hb_001221_090 Hb_000917_100--Hb_001221_090 Hb_014720_020 Hb_014720_020 Hb_002005_120--Hb_014720_020 Hb_065500_030 Hb_065500_030 Hb_002005_120--Hb_065500_030 Hb_003604_050 Hb_003604_050 Hb_002005_120--Hb_003604_050 Hb_003120_070 Hb_003120_070 Hb_002005_120--Hb_003120_070 Hb_003895_020 Hb_003895_020 Hb_000866_080--Hb_003895_020 Hb_000866_080--Hb_011249_060 Hb_000866_080--Hb_015183_100 Hb_000300_250 Hb_000300_250 Hb_000866_080--Hb_000300_250 Hb_000862_040 Hb_000862_040 Hb_000059_020--Hb_000862_040 Hb_000940_200 Hb_000940_200 Hb_000059_020--Hb_000940_200 Hb_005568_040 Hb_005568_040 Hb_000059_020--Hb_005568_040 Hb_000700_060 Hb_000700_060 Hb_000059_020--Hb_000700_060 Hb_000197_030 Hb_000197_030 Hb_000059_020--Hb_000197_030 Hb_000009_330 Hb_000009_330 Hb_000059_020--Hb_000009_330
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.843 27.2653 12.6217 11.7326 9.45282 11.4066
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.69854 2.36663 2.02257 17.4675 7.98623

CAGE analysis