Hb_002016_080

Information

Type -
Description -
Location Contig2016: 95706-99083
Sequence    

Annotation

kegg
ID rcu:RCOM_1177290
description thiamin pyrophosphokinase, putative (EC:2.7.6.2)
nr
ID XP_012082734.1
description PREDICTED: thiamine pyrophosphokinase 1 isoform X1 [Jatropha curcas]
swissprot
ID B9DGU7
description Thiamine pyrophosphokinase 1 OS=Arabidopsis thaliana GN=TPK1 PE=2 SV=1
trembl
ID A0A067JVZ8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13912 PE=4 SV=1
Gene Ontology
ID GO:0004788
description thiamine pyrophosphokinase 1-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20495: 95844-98932 , PASA_asmbl_20496: 98290-98423
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002016_080 0.0 - - PREDICTED: thiamine pyrophosphokinase 1 isoform X1 [Jatropha curcas]
2 Hb_013405_140 0.062977735 - - PREDICTED: uncharacterized protein LOC105648437 [Jatropha curcas]
3 Hb_011485_020 0.069226713 - - protein with unknown function [Ricinus communis]
4 Hb_000922_040 0.0761038312 - - PREDICTED: CASP-like protein 4A3 [Jatropha curcas]
5 Hb_000673_020 0.0769486699 - - PREDICTED: ATP synthase subunit delta', mitochondrial [Jatropha curcas]
6 Hb_000413_280 0.0772394624 - - PREDICTED: probable UDP-3-O-acylglucosamine N-acyltransferase 2, mitochondrial [Jatropha curcas]
7 Hb_003783_030 0.0780431228 - - hypothetical protein POPTR_0018s13980g [Populus trichocarpa]
8 Hb_007037_020 0.0805832096 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 78 [Jatropha curcas]
9 Hb_008232_010 0.0858558166 transcription factor TF Family: C2C2-GATA GATA transcription factor, putative [Ricinus communis]
10 Hb_011021_040 0.0858721181 transcription factor TF Family: Trihelix PREDICTED: phosphatidylinositol/phosphatidylcholine transfer protein SFH9 [Jatropha curcas]
11 Hb_003880_030 0.0861250541 - - PREDICTED: protein TIC 21, chloroplastic [Jatropha curcas]
12 Hb_001123_160 0.0883901541 rubber biosynthesis Gene Name: Pyruvate dehydrogenase PREDICTED: pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial isoform X2 [Jatropha curcas]
13 Hb_000934_190 0.0896641403 - - SER/ARG-rich protein 34A [Theobroma cacao]
14 Hb_002631_180 0.0913548178 transcription factor TF Family: NF-YC PREDICTED: nuclear transcription factor Y subunit C-2 [Jatropha curcas]
15 Hb_001053_140 0.0920062977 - - PREDICTED: ATP synthase subunit O, mitochondrial [Jatropha curcas]
16 Hb_000424_200 0.0946578868 - - hypothetical protein JCGZ_07583 [Jatropha curcas]
17 Hb_000571_020 0.095344965 - - PREDICTED: BAG family molecular chaperone regulator 4 isoform X1 [Jatropha curcas]
18 Hb_000111_450 0.0968878591 - - PREDICTED: probable choline kinase 2 [Jatropha curcas]
19 Hb_003622_040 0.0970404123 - - PREDICTED: mitochondrial fission 1 protein A [Jatropha curcas]
20 Hb_001979_020 0.0984649123 - - hypothetical protein OsJ_31823 [Oryza sativa Japonica Group]

Gene co-expression network

sample Hb_002016_080 Hb_002016_080 Hb_013405_140 Hb_013405_140 Hb_002016_080--Hb_013405_140 Hb_011485_020 Hb_011485_020 Hb_002016_080--Hb_011485_020 Hb_000922_040 Hb_000922_040 Hb_002016_080--Hb_000922_040 Hb_000673_020 Hb_000673_020 Hb_002016_080--Hb_000673_020 Hb_000413_280 Hb_000413_280 Hb_002016_080--Hb_000413_280 Hb_003783_030 Hb_003783_030 Hb_002016_080--Hb_003783_030 Hb_013405_140--Hb_011485_020 Hb_013405_140--Hb_000673_020 Hb_007037_020 Hb_007037_020 Hb_013405_140--Hb_007037_020 Hb_013405_140--Hb_003783_030 Hb_011021_040 Hb_011021_040 Hb_013405_140--Hb_011021_040 Hb_000436_030 Hb_000436_030 Hb_011485_020--Hb_000436_030 Hb_000479_160 Hb_000479_160 Hb_011485_020--Hb_000479_160 Hb_001053_140 Hb_001053_140 Hb_011485_020--Hb_001053_140 Hb_011485_020--Hb_007037_020 Hb_005269_080 Hb_005269_080 Hb_000922_040--Hb_005269_080 Hb_000384_120 Hb_000384_120 Hb_000922_040--Hb_000384_120 Hb_001222_080 Hb_001222_080 Hb_000922_040--Hb_001222_080 Hb_000701_100 Hb_000701_100 Hb_000922_040--Hb_000701_100 Hb_001410_060 Hb_001410_060 Hb_000922_040--Hb_001410_060 Hb_003880_030 Hb_003880_030 Hb_000673_020--Hb_003880_030 Hb_000175_030 Hb_000175_030 Hb_000673_020--Hb_000175_030 Hb_027654_050 Hb_027654_050 Hb_000673_020--Hb_027654_050 Hb_000934_190 Hb_000934_190 Hb_000673_020--Hb_000934_190 Hb_000538_120 Hb_000538_120 Hb_000413_280--Hb_000538_120 Hb_011671_440 Hb_011671_440 Hb_000413_280--Hb_011671_440 Hb_000302_140 Hb_000302_140 Hb_000413_280--Hb_000302_140 Hb_000571_020 Hb_000571_020 Hb_000413_280--Hb_000571_020 Hb_004705_080 Hb_004705_080 Hb_000413_280--Hb_004705_080 Hb_003783_030--Hb_007037_020 Hb_003783_030--Hb_000673_020 Hb_001481_140 Hb_001481_140 Hb_003783_030--Hb_001481_140 Hb_003462_120 Hb_003462_120 Hb_003783_030--Hb_003462_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.79197 5.03275 6.59778 9.48368 2.62989 3.25042
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.6082 19.818 14.8423 9.87466 6.73907

CAGE analysis