Hb_002016_100

Information

Type -
Description -
Location Contig2016: 112145-114985
Sequence    

Annotation

kegg
ID rcu:RCOM_1177550
description Small nuclear ribonucleoprotein SM D3, putative
nr
ID XP_002523061.1
description Small nuclear ribonucleoprotein SM D3, putative [Ricinus communis]
swissprot
ID Q43582
description Probable U6 snRNA-associated Sm-like protein LSm4 OS=Nicotiana tabacum PE=2 SV=1
trembl
ID B9SAP2
description Small nuclear ribonucleoprotein SM D3, putative OS=Ricinus communis GN=RCOM_1177550 PE=4 SV=1
Gene Ontology
ID GO:0005681
description probable u6 snrna-associated sm-like protein lsm4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20501: 112443-114975 , PASA_asmbl_20502: 112535-114975
cDNA
(Sanger)
(ID:Location)		 016_J10.ab1: 112443-114845 , 026_H14.ab1: 112443-114779 , 029_M17.ab1: 112450-114787 , 038_K19.ab1: 112443-114849 , 046_B14.ab1: 112438-114842

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002016_100 0.0 - - Small nuclear ribonucleoprotein SM D3, putative [Ricinus communis]
2 Hb_000025_120 0.0823890306 - - PREDICTED: uncharacterized protein LOC105628946 isoform X1 [Jatropha curcas]
3 Hb_000668_040 0.0825369018 - - PREDICTED: random slug protein 5-like [Jatropha curcas]
4 Hb_020400_050 0.0837678732 - - PREDICTED: uncharacterized protein At5g19025-like isoform X1 [Populus euphratica]
5 Hb_001833_110 0.08468555 - - conserved hypothetical protein [Ricinus communis]
6 Hb_001105_070 0.0859826467 - - PREDICTED: uncharacterized protein LOC105632829 [Jatropha curcas]
7 Hb_000496_060 0.0874307937 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH3 [Jatropha curcas]
8 Hb_012053_070 0.0891791114 - - PREDICTED: uncharacterized protein LOC105637344 [Jatropha curcas]
9 Hb_000123_170 0.0893137306 - - Rab3 [Hevea brasiliensis]
10 Hb_000053_100 0.0893868615 - - PREDICTED: uncharacterized protein LOC105642071 [Jatropha curcas]
11 Hb_015807_040 0.0898643726 - - PREDICTED: polycomb group protein FERTILIZATION-INDEPENDENT ENDOSPERM [Jatropha curcas]
12 Hb_001421_060 0.0902255914 - - PREDICTED: tobamovirus multiplication protein 2B isoform X2 [Jatropha curcas]
13 Hb_000625_070 0.0915069351 transcription factor TF Family: CSD PREDICTED: cold shock domain-containing protein 3 [Jatropha curcas]
14 Hb_000201_120 0.0921879508 - - ubiquitin-protein ligase 2a [Hevea brasiliensis]
15 Hb_024185_020 0.0932479481 - - -
16 Hb_002027_210 0.0943361802 - - Histidine-containing phosphotransfer protein, putative [Ricinus communis]
17 Hb_000373_120 0.0944376421 transcription factor TF Family: Trihelix PREDICTED: uncharacterized protein LOC105629120 [Jatropha curcas]
18 Hb_024714_010 0.0950976813 - - HSP20-like chaperones superfamily protein isoform 1 [Theobroma cacao]
19 Hb_001360_050 0.0955628409 - - PREDICTED: probable helicase MAGATAMA 3 isoform X1 [Jatropha curcas]
20 Hb_005432_030 0.0957817342 - - PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 7 [Gossypium raimondii]

Gene co-expression network

sample Hb_002016_100 Hb_002016_100 Hb_000025_120 Hb_000025_120 Hb_002016_100--Hb_000025_120 Hb_000668_040 Hb_000668_040 Hb_002016_100--Hb_000668_040 Hb_020400_050 Hb_020400_050 Hb_002016_100--Hb_020400_050 Hb_001833_110 Hb_001833_110 Hb_002016_100--Hb_001833_110 Hb_001105_070 Hb_001105_070 Hb_002016_100--Hb_001105_070 Hb_000496_060 Hb_000496_060 Hb_002016_100--Hb_000496_060 Hb_000025_120--Hb_000496_060 Hb_014720_080 Hb_014720_080 Hb_000025_120--Hb_014720_080 Hb_000347_410 Hb_000347_410 Hb_000025_120--Hb_000347_410 Hb_000025_120--Hb_001105_070 Hb_000146_020 Hb_000146_020 Hb_000025_120--Hb_000146_020 Hb_000834_270 Hb_000834_270 Hb_000025_120--Hb_000834_270 Hb_000201_120 Hb_000201_120 Hb_000668_040--Hb_000201_120 Hb_001832_010 Hb_001832_010 Hb_000668_040--Hb_001832_010 Hb_000680_140 Hb_000680_140 Hb_000668_040--Hb_000680_140 Hb_001396_100 Hb_001396_100 Hb_000668_040--Hb_001396_100 Hb_010080_090 Hb_010080_090 Hb_000668_040--Hb_010080_090 Hb_000125_190 Hb_000125_190 Hb_020400_050--Hb_000125_190 Hb_000123_170 Hb_000123_170 Hb_020400_050--Hb_000123_170 Hb_020400_050--Hb_000025_120 Hb_002061_040 Hb_002061_040 Hb_020400_050--Hb_002061_040 Hb_012053_070 Hb_012053_070 Hb_020400_050--Hb_012053_070 Hb_002759_060 Hb_002759_060 Hb_001833_110--Hb_002759_060 Hb_001360_050 Hb_001360_050 Hb_001833_110--Hb_001360_050 Hb_015807_040 Hb_015807_040 Hb_001833_110--Hb_015807_040 Hb_001833_110--Hb_001832_010 Hb_004724_340 Hb_004724_340 Hb_001833_110--Hb_004724_340 Hb_000041_050 Hb_000041_050 Hb_001833_110--Hb_000041_050 Hb_005431_010 Hb_005431_010 Hb_001105_070--Hb_005431_010 Hb_001105_070--Hb_012053_070 Hb_000987_070 Hb_000987_070 Hb_001105_070--Hb_000987_070 Hb_009773_020 Hb_009773_020 Hb_001105_070--Hb_009773_020 Hb_065525_020 Hb_065525_020 Hb_001105_070--Hb_065525_020 Hb_005432_030 Hb_005432_030 Hb_000496_060--Hb_005432_030 Hb_003175_040 Hb_003175_040 Hb_000496_060--Hb_003175_040 Hb_117134_010 Hb_117134_010 Hb_000496_060--Hb_117134_010 Hb_000496_060--Hb_014720_080 Hb_000496_060--Hb_001833_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
74.1365 24.4304 24.0435 63.7623 47.9225 73.6894
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
159.071 122.429 96.4151 44.535 57.6456

CAGE analysis