Hb_002016_140

Information

Type -
Description -
Location Contig2016: 143536-146783
Sequence    

Annotation

kegg
ID rcu:RCOM_1177910
description ubiquitin-protein ligase, putative
nr
ID XP_012082744.1
description PREDICTED: probable E3 ubiquitin-protein ligase BAH1-like 1 [Jatropha curcas]
swissprot
ID B8B5U8
description Probable E3 ubiquitin-protein ligase BAH1-like 1 OS=Oryza sativa subsp. indica GN=OsI_27296 PE=3 SV=1
trembl
ID A0A067JW70
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13918 PE=4 SV=1
Gene Ontology
ID GO:0004842
description probable e3 ubiquitin-protein ligase bah1-like 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20512: 144405-146592
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002016_140 0.0 - - PREDICTED: probable E3 ubiquitin-protein ligase BAH1-like 1 [Jatropha curcas]
2 Hb_002391_320 0.109337519 - - PREDICTED: phospholipase D delta-like [Jatropha curcas]
3 Hb_001329_070 0.1113830051 - - Glycogen synthase kinase-3 beta, putative [Ricinus communis]
4 Hb_000589_170 0.1184321099 - - PREDICTED: telomere repeat-binding protein 4 isoform X3 [Jatropha curcas]
5 Hb_012851_020 0.1215436087 - - PREDICTED: aminodeoxychorismate synthase, chloroplastic isoform X2 [Jatropha curcas]
6 Hb_000753_110 0.1224244136 transcription factor TF Family: bHLH PREDICTED: transcription factor BIM1 isoform X6 [Jatropha curcas]
7 Hb_000206_230 0.1224359417 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000310_120 0.1232392633 - - PREDICTED: probable transaldolase [Jatropha curcas]
9 Hb_001587_040 0.1248416554 - - PREDICTED: soluble inorganic pyrophosphatase 6, chloroplastic [Jatropha curcas]
10 Hb_001863_070 0.126264821 - - Queuine tRNA-ribosyltransferase [Theobroma cacao]
11 Hb_003398_040 0.1263427489 - - PREDICTED: actin-related protein 5 isoform X1 [Jatropha curcas]
12 Hb_001754_050 0.1295879133 - - protein arginine n-methyltransferase, putative [Ricinus communis]
13 Hb_000310_060 0.1352896197 - - hypothetical protein JCGZ_20793 [Jatropha curcas]
14 Hb_000057_130 0.1357942634 - - PREDICTED: pyridoxal 5'-phosphate synthase-like subunit PDX1.2 [Jatropha curcas]
15 Hb_000307_070 0.1366777889 - - protein kinase, putative [Ricinus communis]
16 Hb_000392_250 0.1372500088 - - PREDICTED: HVA22-like protein a [Jatropha curcas]
17 Hb_000115_360 0.1411611146 - - PREDICTED: probable protein phosphatase 2C 15 isoform X3 [Jatropha curcas]
18 Hb_013405_070 0.1422686167 - - ferric-chelate reductase, putative [Ricinus communis]
19 Hb_000009_420 0.1436307097 - - PREDICTED: uncharacterized protein LOC105639614 isoform X2 [Jatropha curcas]
20 Hb_000327_200 0.1455908288 - - glutathione-s-transferase omega, putative [Ricinus communis]

Gene co-expression network

sample Hb_002016_140 Hb_002016_140 Hb_002391_320 Hb_002391_320 Hb_002016_140--Hb_002391_320 Hb_001329_070 Hb_001329_070 Hb_002016_140--Hb_001329_070 Hb_000589_170 Hb_000589_170 Hb_002016_140--Hb_000589_170 Hb_012851_020 Hb_012851_020 Hb_002016_140--Hb_012851_020 Hb_000753_110 Hb_000753_110 Hb_002016_140--Hb_000753_110 Hb_000206_230 Hb_000206_230 Hb_002016_140--Hb_000206_230 Hb_000115_360 Hb_000115_360 Hb_002391_320--Hb_000115_360 Hb_012762_040 Hb_012762_040 Hb_002391_320--Hb_012762_040 Hb_007101_260 Hb_007101_260 Hb_002391_320--Hb_007101_260 Hb_001250_080 Hb_001250_080 Hb_002391_320--Hb_001250_080 Hb_004129_010 Hb_004129_010 Hb_002391_320--Hb_004129_010 Hb_001329_070--Hb_000206_230 Hb_002027_440 Hb_002027_440 Hb_001329_070--Hb_002027_440 Hb_011242_050 Hb_011242_050 Hb_001329_070--Hb_011242_050 Hb_013405_070 Hb_013405_070 Hb_001329_070--Hb_013405_070 Hb_003602_060 Hb_003602_060 Hb_001329_070--Hb_003602_060 Hb_000098_180 Hb_000098_180 Hb_000589_170--Hb_000098_180 Hb_015778_040 Hb_015778_040 Hb_000589_170--Hb_015778_040 Hb_001009_140 Hb_001009_140 Hb_000589_170--Hb_001009_140 Hb_023091_010 Hb_023091_010 Hb_000589_170--Hb_023091_010 Hb_000589_170--Hb_013405_070 Hb_000979_140 Hb_000979_140 Hb_000589_170--Hb_000979_140 Hb_012851_020--Hb_000115_360 Hb_000622_060 Hb_000622_060 Hb_012851_020--Hb_000622_060 Hb_000560_040 Hb_000560_040 Hb_012851_020--Hb_000560_040 Hb_002529_090 Hb_002529_090 Hb_012851_020--Hb_002529_090 Hb_002486_020 Hb_002486_020 Hb_012851_020--Hb_002486_020 Hb_003299_020 Hb_003299_020 Hb_000753_110--Hb_003299_020 Hb_002641_120 Hb_002641_120 Hb_000753_110--Hb_002641_120 Hb_000310_060 Hb_000310_060 Hb_000753_110--Hb_000310_060 Hb_000009_420 Hb_000009_420 Hb_000753_110--Hb_000009_420 Hb_000186_030 Hb_000186_030 Hb_000753_110--Hb_000186_030 Hb_003398_040 Hb_003398_040 Hb_000753_110--Hb_003398_040 Hb_000206_230--Hb_011242_050 Hb_002007_320 Hb_002007_320 Hb_000206_230--Hb_002007_320 Hb_000310_120 Hb_000310_120 Hb_000206_230--Hb_000310_120 Hb_000206_230--Hb_013405_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.259963 2.89645 7.8042 5.64823 0.164104 0.393365
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.17205 2.8136 0.978505 3.75448 5.29989

CAGE analysis