Hb_002016_150

Information

Type -
Description -
Location Contig2016: 148834-151259
Sequence    

Annotation

kegg
ID rcu:RCOM_1177920
description hypothetical protein
nr
ID XP_012082745.1
description PREDICTED: uncharacterized protein LOC105642512 [Jatropha curcas]
swissprot
ID Q8LGG8
description Universal stress protein A-like protein OS=Arabidopsis thaliana GN=At3g01520 PE=1 SV=2
trembl
ID A0A067JZC0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13919 PE=4 SV=1
Gene Ontology
ID GO:0005773
description universal stress protein a-like protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20513: 148833-151411
cDNA
(Sanger)
(ID:Location)		 001_M18.ab1: 148857-151262 , 025_P24.ab1: 148833-151220 , 029_E23.ab1: 148992-149212 , 030_J19.ab1: 148863-151218 , 037_I22.ab1: 148836-151215 , 050_G21.ab1: 148835-150976

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002016_150 0.0 - - PREDICTED: uncharacterized protein LOC105642512 [Jatropha curcas]
2 Hb_007304_120 0.0816434862 - - NAD(P)-binding Rossmann-fold superfamily protein isoform 1 [Theobroma cacao]
3 Hb_000679_010 0.0827565644 - - PREDICTED: uncharacterized protein LOC105637663 [Jatropha curcas]
4 Hb_000771_120 0.0842007342 - - PREDICTED: uncharacterized protein LOC105648352 isoform X1 [Jatropha curcas]
5 Hb_000462_130 0.0879229866 - - hypothetical protein CICLE_v10009355mg [Citrus clementina]
6 Hb_000521_320 0.0887546168 - - hypothetical protein POPTR_0001s23520g [Populus trichocarpa]
7 Hb_003747_200 0.0904624378 - - PREDICTED: DNA cross-link repair protein SNM1 [Jatropha curcas]
8 Hb_029388_020 0.0908504124 - - conserved hypothetical protein [Ricinus communis]
9 Hb_012286_030 0.0954512204 transcription factor TF Family: MED7 PREDICTED: mediator of RNA polymerase II transcription subunit 7a [Solanum lycopersicum]
10 Hb_000302_270 0.0955746854 transcription factor TF Family: MYB-related DNA binding protein, putative [Ricinus communis]
11 Hb_008511_120 0.0957049556 - - NADH-ubiquinone oxidoreductase 1, chain, putative [Ricinus communis]
12 Hb_003125_200 0.0974297667 - - PREDICTED: mediator of RNA polymerase II transcription subunit 30 [Jatropha curcas]
13 Hb_000336_150 0.0979310464 - - ribulose-5-phosphate-3-epimerase, putative [Ricinus communis]
14 Hb_001552_020 0.098233479 - - PREDICTED: uncharacterized protein LOC105639653 [Jatropha curcas]
15 Hb_000367_160 0.0986910729 - - PREDICTED: SNAP25 homologous protein SNAP33 [Populus euphratica]
16 Hb_025645_010 0.0987042263 - - PREDICTED: proteasome subunit beta type-5 [Jatropha curcas]
17 Hb_028995_040 0.0988760619 - - PREDICTED: protein MODIFIER OF SNC1 11 isoform X1 [Jatropha curcas]
18 Hb_000205_090 0.0998660523 - - hypothetical protein POPTR_0019s03570g [Populus trichocarpa]
19 Hb_152175_010 0.1001270007 - - Protein grpE, putative [Ricinus communis]
20 Hb_003078_040 0.100144089 - - PREDICTED: hit family protein 1 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_002016_150 Hb_002016_150 Hb_007304_120 Hb_007304_120 Hb_002016_150--Hb_007304_120 Hb_000679_010 Hb_000679_010 Hb_002016_150--Hb_000679_010 Hb_000771_120 Hb_000771_120 Hb_002016_150--Hb_000771_120 Hb_000462_130 Hb_000462_130 Hb_002016_150--Hb_000462_130 Hb_000521_320 Hb_000521_320 Hb_002016_150--Hb_000521_320 Hb_003747_200 Hb_003747_200 Hb_002016_150--Hb_003747_200 Hb_000336_150 Hb_000336_150 Hb_007304_120--Hb_000336_150 Hb_003387_060 Hb_003387_060 Hb_007304_120--Hb_003387_060 Hb_012286_030 Hb_012286_030 Hb_007304_120--Hb_012286_030 Hb_010368_010 Hb_010368_010 Hb_007304_120--Hb_010368_010 Hb_000732_010 Hb_000732_010 Hb_007304_120--Hb_000732_010 Hb_032202_190 Hb_032202_190 Hb_000679_010--Hb_032202_190 Hb_003092_040 Hb_003092_040 Hb_000679_010--Hb_003092_040 Hb_025645_010 Hb_025645_010 Hb_000679_010--Hb_025645_010 Hb_001902_140 Hb_001902_140 Hb_000679_010--Hb_001902_140 Hb_008511_120 Hb_008511_120 Hb_000679_010--Hb_008511_120 Hb_006615_020 Hb_006615_020 Hb_000679_010--Hb_006615_020 Hb_000771_120--Hb_025645_010 Hb_000302_270 Hb_000302_270 Hb_000771_120--Hb_000302_270 Hb_000771_120--Hb_003747_200 Hb_007477_070 Hb_007477_070 Hb_000771_120--Hb_007477_070 Hb_001404_100 Hb_001404_100 Hb_000771_120--Hb_001404_100 Hb_028995_040 Hb_028995_040 Hb_000771_120--Hb_028995_040 Hb_001534_050 Hb_001534_050 Hb_000462_130--Hb_001534_050 Hb_004453_170 Hb_004453_170 Hb_000462_130--Hb_004453_170 Hb_001832_060 Hb_001832_060 Hb_000462_130--Hb_001832_060 Hb_000462_130--Hb_028995_040 Hb_000698_030 Hb_000698_030 Hb_000462_130--Hb_000698_030 Hb_003078_040 Hb_003078_040 Hb_000462_130--Hb_003078_040 Hb_000521_320--Hb_000302_270 Hb_000010_400 Hb_000010_400 Hb_000521_320--Hb_000010_400 Hb_004678_040 Hb_004678_040 Hb_000521_320--Hb_004678_040 Hb_002950_100 Hb_002950_100 Hb_000521_320--Hb_002950_100 Hb_011995_010 Hb_011995_010 Hb_000521_320--Hb_011995_010 Hb_000521_320--Hb_025645_010 Hb_002490_020 Hb_002490_020 Hb_003747_200--Hb_002490_020 Hb_003747_200--Hb_000302_270 Hb_142368_010 Hb_142368_010 Hb_003747_200--Hb_142368_010 Hb_002141_030 Hb_002141_030 Hb_003747_200--Hb_002141_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
266.312 251.404 268.184 139.938 249.377 141.355
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
373.406 340.717 304.701 169.605 120.194

CAGE analysis