Hb_002016_170

Information

Type -
Description -
Location Contig2016: 156982-162582
Sequence    

Annotation

kegg
ID rcu:RCOM_1177930
description DNA binding protein, putative
nr
ID XP_002523069.1
description DNA binding protein, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SAQ0
description DNA binding protein, putative OS=Ricinus communis GN=RCOM_1177930 PE=4 SV=1
Gene Ontology
ID GO:0008270
description dna binding

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20515: 157071-162572 , PASA_asmbl_20518: 159797-160146 , PASA_asmbl_20519: 159210-159554
cDNA
(Sanger)
(ID:Location)		 005_P15.ab1: 158153-162081 , 028_J12.ab1: 157071-161049 , 036_J14.ab1: 157067-161226

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002016_170 0.0 - - DNA binding protein, putative [Ricinus communis]
2 Hb_002374_570 0.0883549825 - - PREDICTED: vesicle-associated protein 1-2-like [Jatropha curcas]
3 Hb_003994_290 0.0892833809 - - PREDICTED: glyceraldehyde-3-phosphate dehydrogenase GAPCP2, chloroplastic [Jatropha curcas]
4 Hb_000212_330 0.0910356964 - - PREDICTED: biotin carboxyl carrier protein of acetyl-CoA carboxylase 1, chloroplastic isoform X1 [Jatropha curcas]
5 Hb_001983_020 0.0966471516 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5 [Jatropha curcas]
6 Hb_000094_300 0.0978446379 - - hypothetical protein POPTR_0002s26360g [Populus trichocarpa]
7 Hb_181729_010 0.1023324075 - - PREDICTED: DNA polymerase epsilon subunit 2 isoform X1 [Jatropha curcas]
8 Hb_000676_250 0.1029359876 - - PREDICTED: protein RTE1-HOMOLOG isoform X1 [Jatropha curcas]
9 Hb_012258_010 0.1049617618 - - PREDICTED: cyclase-associated protein 1 [Jatropha curcas]
10 Hb_002686_170 0.1056813349 - - PREDICTED: uncharacterized protein LOC105632645 isoform X1 [Jatropha curcas]
11 Hb_010368_010 0.1060422142 - - RNA splicing protein mrs2, mitochondrial, putative [Ricinus communis]
12 Hb_008511_120 0.1063570477 - - NADH-ubiquinone oxidoreductase 1, chain, putative [Ricinus communis]
13 Hb_008013_050 0.1065087386 transcription factor TF Family: PHD PREDICTED: PHD finger protein At1g33420 [Jatropha curcas]
14 Hb_008511_130 0.1071435267 - - PREDICTED: probable phenylalanine--tRNA ligase alpha subunit [Jatropha curcas]
15 Hb_006059_050 0.1118159306 - - PREDICTED: polyadenylate-binding protein 1 [Jatropha curcas]
16 Hb_002234_180 0.1126386319 - - conserved hypothetical protein [Ricinus communis]
17 Hb_171376_010 0.1129006003 - - PREDICTED: uncharacterized protein LOC105630877 isoform X1 [Jatropha curcas]
18 Hb_003922_010 0.1139257914 - - PREDICTED: probable phospholipid hydroperoxide glutathione peroxidase [Jatropha curcas]
19 Hb_001711_020 0.1152007177 - - PREDICTED: AP-2 complex subunit mu [Jatropha curcas]
20 Hb_004837_270 0.1165510504 - - PREDICTED: cinnamoyl-CoA reductase 1 [Jatropha curcas]

Gene co-expression network

sample Hb_002016_170 Hb_002016_170 Hb_002374_570 Hb_002374_570 Hb_002016_170--Hb_002374_570 Hb_003994_290 Hb_003994_290 Hb_002016_170--Hb_003994_290 Hb_000212_330 Hb_000212_330 Hb_002016_170--Hb_000212_330 Hb_001983_020 Hb_001983_020 Hb_002016_170--Hb_001983_020 Hb_000094_300 Hb_000094_300 Hb_002016_170--Hb_000094_300 Hb_181729_010 Hb_181729_010 Hb_002016_170--Hb_181729_010 Hb_118419_010 Hb_118419_010 Hb_002374_570--Hb_118419_010 Hb_001124_090 Hb_001124_090 Hb_002374_570--Hb_001124_090 Hb_000457_180 Hb_000457_180 Hb_002374_570--Hb_000457_180 Hb_001318_250 Hb_001318_250 Hb_002374_570--Hb_001318_250 Hb_003728_060 Hb_003728_060 Hb_002374_570--Hb_003728_060 Hb_032808_010 Hb_032808_010 Hb_003994_290--Hb_032808_010 Hb_001711_020 Hb_001711_020 Hb_003994_290--Hb_001711_020 Hb_008511_120 Hb_008511_120 Hb_003994_290--Hb_008511_120 Hb_008013_050 Hb_008013_050 Hb_003994_290--Hb_008013_050 Hb_000521_080 Hb_000521_080 Hb_003994_290--Hb_000521_080 Hb_009545_080 Hb_009545_080 Hb_000212_330--Hb_009545_080 Hb_000212_330--Hb_000094_300 Hb_008748_040 Hb_008748_040 Hb_000212_330--Hb_008748_040 Hb_008511_130 Hb_008511_130 Hb_000212_330--Hb_008511_130 Hb_054865_120 Hb_054865_120 Hb_000212_330--Hb_054865_120 Hb_000883_020 Hb_000883_020 Hb_000212_330--Hb_000883_020 Hb_000069_600 Hb_000069_600 Hb_001983_020--Hb_000069_600 Hb_000679_010 Hb_000679_010 Hb_001983_020--Hb_000679_010 Hb_001983_020--Hb_000212_330 Hb_032202_190 Hb_032202_190 Hb_001983_020--Hb_032202_190 Hb_172426_040 Hb_172426_040 Hb_001983_020--Hb_172426_040 Hb_000958_110 Hb_000958_110 Hb_001983_020--Hb_000958_110 Hb_000094_300--Hb_008511_130 Hb_000094_300--Hb_009545_080 Hb_000053_130 Hb_000053_130 Hb_000094_300--Hb_000053_130 Hb_000094_300--Hb_000521_080 Hb_000141_250 Hb_000141_250 Hb_000094_300--Hb_000141_250 Hb_010368_010 Hb_010368_010 Hb_181729_010--Hb_010368_010 Hb_002234_180 Hb_002234_180 Hb_181729_010--Hb_002234_180 Hb_181729_010--Hb_008013_050 Hb_019280_050 Hb_019280_050 Hb_181729_010--Hb_019280_050 Hb_171376_010 Hb_171376_010 Hb_181729_010--Hb_171376_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
26.5418 15.2709 33.5856 24.4803 16.9235 22.9695
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
48.786 21.0254 33.7637 16.2809 14.8326

CAGE analysis