Hb_002023_020

Information

Type -
Description -
Location Contig2023: 52885-74172
Sequence    

Annotation

kegg
ID pop:POPTR_0016s03020g
description POPTRDRAFT_255163; aladin-related family protein
nr
ID XP_012083887.1
description PREDICTED: aladin isoform X2 [Jatropha curcas]
swissprot
ID Q8GWR1
description Aladin OS=Arabidopsis thaliana GN=AAAS PE=1 SV=1
trembl
ID A0A067K8B6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19472 PE=4 SV=1
Gene Ontology
ID GO:0005635
description aladin isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20542: 42206-53393 , PASA_asmbl_20543: 53406-69556 , PASA_asmbl_20544: 72815-74250
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002023_020 0.0 - - PREDICTED: aladin isoform X2 [Jatropha curcas]
2 Hb_039253_010 0.0604638509 - - PREDICTED: zinc finger CCCH domain-containing protein 31 isoform X2 [Jatropha curcas]
3 Hb_003656_140 0.0687139258 - - PREDICTED: PHD finger protein ALFIN-LIKE 4 isoform X1 [Jatropha curcas]
4 Hb_137403_010 0.078446499 - - PREDICTED: actin-related protein 9 [Jatropha curcas]
5 Hb_000364_150 0.086709151 - - -
6 Hb_000307_200 0.0924001229 - - PREDICTED: uncharacterized protein LOC105638529 [Jatropha curcas]
7 Hb_071736_010 0.0948877006 - - Metallopeptidase M24 family protein isoform 1 [Theobroma cacao]
8 Hb_006252_010 0.0957402411 - - PREDICTED: alpha-ketoglutarate-dependent dioxygenase alkB homolog 6 isoform X1 [Jatropha curcas]
9 Hb_005883_050 0.0974033695 - - PREDICTED: transportin-3 [Jatropha curcas]
10 Hb_000671_100 0.0979541303 - - hypothetical protein POPTR_0017s06410g [Populus trichocarpa]
11 Hb_012286_050 0.1012456917 - - PREDICTED: syntaxin-61 [Jatropha curcas]
12 Hb_002982_040 0.1039977446 - - mta/sah nucleosidase, putative [Ricinus communis]
13 Hb_003434_060 0.1040160691 - - PREDICTED: membrane-bound transcription factor site-2 protease homolog isoform X1 [Jatropha curcas]
14 Hb_185830_020 0.1060071567 - - ABC transporter family protein [Hevea brasiliensis]
15 Hb_000120_500 0.1114830979 - - PREDICTED: AT-hook motif nuclear-localized protein 10-like [Jatropha curcas]
16 Hb_000977_310 0.1123660611 - - PREDICTED: gamma-tubulin complex component 2 isoform X4 [Jatropha curcas]
17 Hb_002902_110 0.1126248378 - - PREDICTED: casein kinase II subunit alpha [Jatropha curcas]
18 Hb_033312_140 0.1135084946 - - RNA and export factor-binding family protein [Populus trichocarpa]
19 Hb_000183_040 0.1137642914 - - mannose-1-phosphate guanyltransferase, putative [Ricinus communis]
20 Hb_041392_010 0.1141014164 - - PREDICTED: DNA-binding protein BIN4 [Jatropha curcas]

Gene co-expression network

sample Hb_002023_020 Hb_002023_020 Hb_039253_010 Hb_039253_010 Hb_002023_020--Hb_039253_010 Hb_003656_140 Hb_003656_140 Hb_002023_020--Hb_003656_140 Hb_137403_010 Hb_137403_010 Hb_002023_020--Hb_137403_010 Hb_000364_150 Hb_000364_150 Hb_002023_020--Hb_000364_150 Hb_000307_200 Hb_000307_200 Hb_002023_020--Hb_000307_200 Hb_071736_010 Hb_071736_010 Hb_002023_020--Hb_071736_010 Hb_002805_070 Hb_002805_070 Hb_039253_010--Hb_002805_070 Hb_039253_010--Hb_000364_150 Hb_039253_010--Hb_003656_140 Hb_001102_150 Hb_001102_150 Hb_039253_010--Hb_001102_150 Hb_012286_050 Hb_012286_050 Hb_039253_010--Hb_012286_050 Hb_003656_140--Hb_137403_010 Hb_041392_010 Hb_041392_010 Hb_003656_140--Hb_041392_010 Hb_187739_020 Hb_187739_020 Hb_003656_140--Hb_187739_020 Hb_150360_010 Hb_150360_010 Hb_003656_140--Hb_150360_010 Hb_000866_030 Hb_000866_030 Hb_003656_140--Hb_000866_030 Hb_002982_040 Hb_002982_040 Hb_137403_010--Hb_002982_040 Hb_137403_010--Hb_000364_150 Hb_005862_010 Hb_005862_010 Hb_137403_010--Hb_005862_010 Hb_137403_010--Hb_150360_010 Hb_000914_070 Hb_000914_070 Hb_000364_150--Hb_000914_070 Hb_004055_140 Hb_004055_140 Hb_000364_150--Hb_004055_140 Hb_009117_030 Hb_009117_030 Hb_000364_150--Hb_009117_030 Hb_003434_060 Hb_003434_060 Hb_000307_200--Hb_003434_060 Hb_002046_040 Hb_002046_040 Hb_000307_200--Hb_002046_040 Hb_000077_050 Hb_000077_050 Hb_000307_200--Hb_000077_050 Hb_028900_020 Hb_028900_020 Hb_000307_200--Hb_028900_020 Hb_000390_060 Hb_000390_060 Hb_000307_200--Hb_000390_060 Hb_000045_070 Hb_000045_070 Hb_000307_200--Hb_000045_070 Hb_005883_050 Hb_005883_050 Hb_071736_010--Hb_005883_050 Hb_005754_060 Hb_005754_060 Hb_071736_010--Hb_005754_060 Hb_000023_140 Hb_000023_140 Hb_071736_010--Hb_000023_140 Hb_001266_080 Hb_001266_080 Hb_071736_010--Hb_001266_080 Hb_002616_050 Hb_002616_050 Hb_071736_010--Hb_002616_050 Hb_001855_010 Hb_001855_010 Hb_071736_010--Hb_001855_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.86067 3.25478 2.21971 5.51184 7.90486 24.2453
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.6939 5.78338 7.77724 6.61259 2.43572

CAGE analysis