Hb_002023_040

Information

Type -
Description -
Location Contig2023: 63365-71512
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002023_040 0.0 - - -
2 Hb_001278_080 0.1745613673 transcription factor TF Family: AUX/IAA hypothetical protein JCGZ_09311 [Jatropha curcas]
3 Hb_001810_020 0.190264482 - - -
4 Hb_021068_030 0.201774971 transcription factor TF Family: M-type hypothetical protein B456_010G032700 [Gossypium raimondii]
5 Hb_000066_180 0.2388101568 - - hypothetical protein POPTR_0008s02710g [Populus trichocarpa]
6 Hb_000053_050 0.2497420521 - - hypothetical protein F775_01878 [Aegilops tauschii]
7 Hb_000193_030 0.2515235444 - - PREDICTED: heavy metal-associated isoprenylated plant protein 26 [Jatropha curcas]
8 Hb_094132_010 0.2531558371 - - hypothetical protein POPTR_0018s03360g [Populus trichocarpa]
9 Hb_046120_010 0.2578101146 - - -
10 Hb_000907_040 0.2607686056 - - ankyrin repeat-containing protein, putative [Ricinus communis]
11 Hb_002204_040 0.2617662988 - - hypothetical protein B456_008G181200 [Gossypium raimondii]
12 Hb_012150_050 0.2734988981 - - protein binding protein, putative [Ricinus communis]
13 Hb_002126_020 0.2798707808 - - ferrochelatase [Medicago truncatula]
14 Hb_000082_020 0.2816409449 - - -
15 Hb_103093_010 0.2880858891 - - PREDICTED: wall-associated receptor kinase 4-like [Elaeis guineensis]
16 Hb_017895_010 0.288402889 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5-like [Prunus mume]
17 Hb_001907_090 0.2887363499 - - -
18 Hb_148658_010 0.2897777474 - - -
19 Hb_020532_010 0.2925509027 - - PREDICTED: uncharacterized protein LOC105775165 [Gossypium raimondii]
20 Hb_060458_010 0.294600901 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_002023_040 Hb_002023_040 Hb_001278_080 Hb_001278_080 Hb_002023_040--Hb_001278_080 Hb_001810_020 Hb_001810_020 Hb_002023_040--Hb_001810_020 Hb_021068_030 Hb_021068_030 Hb_002023_040--Hb_021068_030 Hb_000066_180 Hb_000066_180 Hb_002023_040--Hb_000066_180 Hb_000053_050 Hb_000053_050 Hb_002023_040--Hb_000053_050 Hb_000193_030 Hb_000193_030 Hb_002023_040--Hb_000193_030 Hb_017895_010 Hb_017895_010 Hb_001278_080--Hb_017895_010 Hb_001278_080--Hb_021068_030 Hb_001278_080--Hb_000053_050 Hb_002368_090 Hb_002368_090 Hb_001278_080--Hb_002368_090 Hb_002204_040 Hb_002204_040 Hb_001278_080--Hb_002204_040 Hb_148658_010 Hb_148658_010 Hb_001810_020--Hb_148658_010 Hb_001810_020--Hb_000066_180 Hb_157968_010 Hb_157968_010 Hb_001810_020--Hb_157968_010 Hb_090545_010 Hb_090545_010 Hb_001810_020--Hb_090545_010 Hb_007416_080 Hb_007416_080 Hb_001810_020--Hb_007416_080 Hb_020532_010 Hb_020532_010 Hb_021068_030--Hb_020532_010 Hb_002942_180 Hb_002942_180 Hb_021068_030--Hb_002942_180 Hb_030885_020 Hb_030885_020 Hb_021068_030--Hb_030885_020 Hb_011639_090 Hb_011639_090 Hb_021068_030--Hb_011639_090 Hb_001907_090 Hb_001907_090 Hb_000066_180--Hb_001907_090 Hb_000066_180--Hb_000193_030 Hb_000340_330 Hb_000340_330 Hb_000066_180--Hb_000340_330 Hb_005318_020 Hb_005318_020 Hb_000066_180--Hb_005318_020 Hb_000066_180--Hb_148658_010 Hb_094132_010 Hb_094132_010 Hb_000066_180--Hb_094132_010 Hb_000053_050--Hb_002368_090 Hb_046120_010 Hb_046120_010 Hb_000053_050--Hb_046120_010 Hb_000082_020 Hb_000082_020 Hb_000053_050--Hb_000082_020 Hb_041025_010 Hb_041025_010 Hb_000053_050--Hb_041025_010 Hb_000193_030--Hb_094132_010 Hb_103093_010 Hb_103093_010 Hb_000193_030--Hb_103093_010 Hb_163132_010 Hb_163132_010 Hb_000193_030--Hb_163132_010 Hb_007356_010 Hb_007356_010 Hb_000193_030--Hb_007356_010 Hb_007290_020 Hb_007290_020 Hb_000193_030--Hb_007290_020 Hb_068804_060 Hb_068804_060 Hb_000193_030--Hb_068804_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.099651 0.185959 0.461011 0 1.40956
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.184859 0

CAGE analysis