Hb_002024_010

Information

Type -
Description -
Location Contig2024: 36890-38427
Sequence    

Annotation

kegg
ID sot:102579206
description uncharacterized LOC102579206
nr
ID KJB18502.1
description hypothetical protein B456_003G0564002, partial [Gossypium raimondii]
swissprot
ID -
description -
trembl
ID A0A0D2MJS6
description Gossypium raimondii chromosome 3, whole genome shotgun sequence (Fragment) OS=Gossypium raimondii GN=B456_003G0564002 PE=4 SV=1
Gene Ontology
ID GO:0009507
description adenosine kinase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20545: 36841-71884
cDNA
(Sanger)
(ID:Location)		 013_N03.ab1: 36841-54056 , 035_J13.ab1: 36841-38340

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002024_010 0.0 - - hypothetical protein B456_003G0564002, partial [Gossypium raimondii]
2 Hb_012286_010 0.0850732516 - - PREDICTED: eukaryotic translation initiation factor 3 subunit C-like [Jatropha curcas]
3 Hb_004994_380 0.0924538529 - - hypothetical protein JCGZ_14410 [Jatropha curcas]
4 Hb_002084_020 0.1095383284 - - hypothetical protein JCGZ_04066 [Jatropha curcas]
5 Hb_010710_070 0.1107025604 - - PREDICTED: protein TOC75-3, chloroplastic-like [Populus euphratica]
6 Hb_012799_030 0.116065941 - - PREDICTED: pentatricopeptide repeat-containing protein At1g55630-like [Jatropha curcas]
7 Hb_001322_140 0.1162935322 - - PREDICTED: 50S ribosomal protein L19-1, chloroplastic [Jatropha curcas]
8 Hb_188063_020 0.1171469119 - - conserved hypothetical protein [Ricinus communis]
9 Hb_001322_190 0.12037013 - - PREDICTED: uncharacterized protein LOC105632381 [Jatropha curcas]
10 Hb_000034_040 0.1204819716 - - PREDICTED: histidine--tRNA ligase [Jatropha curcas]
11 Hb_003794_010 0.1206809401 - - PREDICTED: uncharacterized protein LOC105641013 [Jatropha curcas]
12 Hb_002681_070 0.1238373682 - - PREDICTED: uncharacterized protein LOC105633833 isoform X1 [Jatropha curcas]
13 Hb_007545_030 0.1238922448 - - conserved hypothetical protein [Ricinus communis]
14 Hb_001675_180 0.1240751381 - - PREDICTED: golgin candidate 5 [Jatropha curcas]
15 Hb_000631_080 0.1245256007 transcription factor TF Family: C2H2 PREDICTED: dnaJ homolog subfamily C member 21 [Jatropha curcas]
16 Hb_000072_220 0.124693395 - - PREDICTED: pentatricopeptide repeat-containing protein At3g02490, mitochondrial [Jatropha curcas]
17 Hb_005396_130 0.1247324347 - - PREDICTED: putative nuclear matrix constituent protein 1-like protein [Jatropha curcas]
18 Hb_000093_080 0.1247472363 - - hypothetical protein POPTR_0008s09730g [Populus trichocarpa]
19 Hb_009467_060 0.1247976492 - - PREDICTED: chromo domain-containing protein LHP1 isoform X1 [Jatropha curcas]
20 Hb_032458_010 0.1263288404 - - hypothetical protein JCGZ_21107 [Jatropha curcas]

Gene co-expression network

sample Hb_002024_010 Hb_002024_010 Hb_012286_010 Hb_012286_010 Hb_002024_010--Hb_012286_010 Hb_004994_380 Hb_004994_380 Hb_002024_010--Hb_004994_380 Hb_002084_020 Hb_002084_020 Hb_002024_010--Hb_002084_020 Hb_010710_070 Hb_010710_070 Hb_002024_010--Hb_010710_070 Hb_012799_030 Hb_012799_030 Hb_002024_010--Hb_012799_030 Hb_001322_140 Hb_001322_140 Hb_002024_010--Hb_001322_140 Hb_002276_060 Hb_002276_060 Hb_012286_010--Hb_002276_060 Hb_012286_010--Hb_004994_380 Hb_002193_010 Hb_002193_010 Hb_012286_010--Hb_002193_010 Hb_008489_020 Hb_008489_020 Hb_012286_010--Hb_008489_020 Hb_000170_190 Hb_000170_190 Hb_012286_010--Hb_000170_190 Hb_004994_380--Hb_010710_070 Hb_000076_130 Hb_000076_130 Hb_004994_380--Hb_000076_130 Hb_001014_160 Hb_001014_160 Hb_004994_380--Hb_001014_160 Hb_188063_020 Hb_188063_020 Hb_004994_380--Hb_188063_020 Hb_001141_020 Hb_001141_020 Hb_004994_380--Hb_001141_020 Hb_004963_030 Hb_004963_030 Hb_004994_380--Hb_004963_030 Hb_000836_440 Hb_000836_440 Hb_002084_020--Hb_000836_440 Hb_048476_180 Hb_048476_180 Hb_002084_020--Hb_048476_180 Hb_003938_080 Hb_003938_080 Hb_002084_020--Hb_003938_080 Hb_165928_020 Hb_165928_020 Hb_002084_020--Hb_165928_020 Hb_000820_170 Hb_000820_170 Hb_002084_020--Hb_000820_170 Hb_000034_040 Hb_000034_040 Hb_002084_020--Hb_000034_040 Hb_010710_070--Hb_004963_030 Hb_028912_050 Hb_028912_050 Hb_010710_070--Hb_028912_050 Hb_010710_070--Hb_188063_020 Hb_002849_100 Hb_002849_100 Hb_010710_070--Hb_002849_100 Hb_001442_040 Hb_001442_040 Hb_010710_070--Hb_001442_040 Hb_012799_030--Hb_000034_040 Hb_000201_110 Hb_000201_110 Hb_012799_030--Hb_000201_110 Hb_000193_310 Hb_000193_310 Hb_012799_030--Hb_000193_310 Hb_007416_160 Hb_007416_160 Hb_012799_030--Hb_007416_160 Hb_006711_100 Hb_006711_100 Hb_012799_030--Hb_006711_100 Hb_000803_260 Hb_000803_260 Hb_012799_030--Hb_000803_260 Hb_000804_040 Hb_000804_040 Hb_001322_140--Hb_000804_040 Hb_001700_010 Hb_001700_010 Hb_001322_140--Hb_001700_010 Hb_012022_150 Hb_012022_150 Hb_001322_140--Hb_012022_150 Hb_000205_190 Hb_000205_190 Hb_001322_140--Hb_000205_190 Hb_000184_170 Hb_000184_170 Hb_001322_140--Hb_000184_170 Hb_000224_160 Hb_000224_160 Hb_001322_140--Hb_000224_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
83.2633 31.0076 33.3594 24.2047 46.6502 104.852
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
58.6819 40.7631 68.6139 30.6368 88.4303

CAGE analysis