Hb_002025_020

Information

Type -
Description -
Location Contig2025: 6820-9081
Sequence    

Annotation

kegg
ID tcc:TCM_007015
description Tetratricopeptide repeat (TPR)-like superfamily protein
nr
ID XP_012072440.1
description PREDICTED: pentatricopeptide repeat-containing protein At5g39710 [Jatropha curcas]
swissprot
ID Q9FIX3
description Pentatricopeptide repeat-containing protein At5g39710 OS=Arabidopsis thaliana GN=EMB2745 PE=2 SV=1
trembl
ID A0A067L188
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04868 PE=4 SV=1
Gene Ontology
ID GO:0005739
description pentatricopeptide repeat-containing protein at5g39710

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20553: 7097-7221 , PASA_asmbl_20554: 7469-7787 , PASA_asmbl_20555: 7979-8523 , PASA_asmbl_20557: 8892-11031
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002025_020 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At5g39710 [Jatropha curcas]
2 Hb_000347_070 0.0495944333 - - conserved hypothetical protein [Ricinus communis]
3 Hb_009545_100 0.0512228789 - - PREDICTED: protein OBERON 1 [Jatropha curcas]
4 Hb_003158_010 0.0521848887 - - hypothetical protein JCGZ_17361 [Jatropha curcas]
5 Hb_002835_370 0.0529961528 - - histone deacetylase 1, 2 ,3, putative [Ricinus communis]
6 Hb_004221_020 0.0572127666 - - protein binding protein, putative [Ricinus communis]
7 Hb_000780_230 0.0573764262 transcription factor TF Family: WRKY WRKY protein [Hevea brasiliensis]
8 Hb_123352_020 0.0622120519 - - PREDICTED: pentatricopeptide repeat-containing protein At5g65560 [Jatropha curcas]
9 Hb_000225_040 0.0629433415 - - PREDICTED: translation factor GUF1 homolog, mitochondrial [Nelumbo nucifera]
10 Hb_010618_010 0.0642623109 - - PREDICTED: inactive poly [ADP-ribose] polymerase RCD1 [Jatropha curcas]
11 Hb_000796_030 0.0645984468 - - PREDICTED: pentatricopeptide repeat-containing protein At4g32450, mitochondrial-like [Jatropha curcas]
12 Hb_000152_380 0.0666463849 - - PREDICTED: hypersensitive-induced response protein 4 [Jatropha curcas]
13 Hb_167498_010 0.0666732064 - - PREDICTED: WPP domain-interacting protein 1-like [Jatropha curcas]
14 Hb_001493_030 0.0667663662 - - hypothetical protein MIMGU_mgv1a005351mg [Erythranthe guttata]
15 Hb_001409_020 0.0671422301 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105638648 [Jatropha curcas]
16 Hb_001143_160 0.0682872804 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 26 isoform X2 [Jatropha curcas]
17 Hb_004619_030 0.0683599456 - - PREDICTED: uncharacterized protein LOC105633364 isoform X1 [Jatropha curcas]
18 Hb_009503_030 0.0685060342 - - protein dimerization, putative [Ricinus communis]
19 Hb_000011_200 0.0689512851 - - PREDICTED: 26S protease regulatory subunit 7 isoform X1 [Jatropha curcas]
20 Hb_002518_280 0.0690423324 - - phosphate transporter [Manihot esculenta]

Gene co-expression network

sample Hb_002025_020 Hb_002025_020 Hb_000347_070 Hb_000347_070 Hb_002025_020--Hb_000347_070 Hb_009545_100 Hb_009545_100 Hb_002025_020--Hb_009545_100 Hb_003158_010 Hb_003158_010 Hb_002025_020--Hb_003158_010 Hb_002835_370 Hb_002835_370 Hb_002025_020--Hb_002835_370 Hb_004221_020 Hb_004221_020 Hb_002025_020--Hb_004221_020 Hb_000780_230 Hb_000780_230 Hb_002025_020--Hb_000780_230 Hb_000731_270 Hb_000731_270 Hb_000347_070--Hb_000731_270 Hb_004619_030 Hb_004619_030 Hb_000347_070--Hb_004619_030 Hb_002375_010 Hb_002375_010 Hb_000347_070--Hb_002375_010 Hb_003163_020 Hb_003163_020 Hb_000347_070--Hb_003163_020 Hb_000190_120 Hb_000190_120 Hb_000347_070--Hb_000190_120 Hb_000343_120 Hb_000343_120 Hb_009545_100--Hb_000343_120 Hb_009545_100--Hb_000347_070 Hb_000116_500 Hb_000116_500 Hb_009545_100--Hb_000116_500 Hb_003029_110 Hb_003029_110 Hb_009545_100--Hb_003029_110 Hb_000225_040 Hb_000225_040 Hb_009545_100--Hb_000225_040 Hb_000329_470 Hb_000329_470 Hb_003158_010--Hb_000329_470 Hb_167498_010 Hb_167498_010 Hb_003158_010--Hb_167498_010 Hb_003158_010--Hb_000225_040 Hb_000011_200 Hb_000011_200 Hb_003158_010--Hb_000011_200 Hb_003158_010--Hb_000347_070 Hb_002835_370--Hb_004221_020 Hb_000072_220 Hb_000072_220 Hb_002835_370--Hb_000072_220 Hb_001680_010 Hb_001680_010 Hb_002835_370--Hb_001680_010 Hb_009548_020 Hb_009548_020 Hb_002835_370--Hb_009548_020 Hb_028089_010 Hb_028089_010 Hb_002835_370--Hb_028089_010 Hb_010139_040 Hb_010139_040 Hb_004221_020--Hb_010139_040 Hb_000289_060 Hb_000289_060 Hb_004221_020--Hb_000289_060 Hb_000165_250 Hb_000165_250 Hb_004221_020--Hb_000165_250 Hb_004221_020--Hb_000072_220 Hb_000152_380 Hb_000152_380 Hb_000780_230--Hb_000152_380 Hb_000796_030 Hb_000796_030 Hb_000780_230--Hb_000796_030 Hb_013399_100 Hb_013399_100 Hb_000780_230--Hb_013399_100 Hb_001409_020 Hb_001409_020 Hb_000780_230--Hb_001409_020 Hb_000366_120 Hb_000366_120 Hb_000780_230--Hb_000366_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.29735 3.78132 2.38192 2.55149 5.61185 4.73738
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.52717 3.31807 4.95488 3.83884 3.35361

CAGE analysis