Hb_002025_030

Information

Type -
Description -
Location Contig2025: 13966-15366
Sequence    

Annotation

kegg
ID rcu:RCOM_0774550
description hypothetical protein
nr
ID XP_012072439.1
description PREDICTED: putative nuclease HARBI1 [Jatropha curcas]
swissprot
ID Q96MB7
description Putative nuclease HARBI1 OS=Homo sapiens GN=HARBI1 PE=1 SV=1
trembl
ID A0A067L2D8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04867 PE=4 SV=1
Gene Ontology
ID GO:0005634
description nuclease harbi1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20559: 13659-15115 , PASA_asmbl_20560: 15181-15385
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002025_030 0.0 - - PREDICTED: putative nuclease HARBI1 [Jatropha curcas]
2 Hb_000484_010 0.0688694756 - - PREDICTED: probable ubiquitin-conjugating enzyme E2 23 [Jatropha curcas]
3 Hb_000392_160 0.0865849285 - - PREDICTED: probable methyltransferase PMT2 isoform X1 [Jatropha curcas]
4 Hb_000803_320 0.0889333437 transcription factor TF Family: PHD PREDICTED: histone-lysine N-methyltransferase ATX4 [Jatropha curcas]
5 Hb_003340_010 0.091629971 - - PREDICTED: ubiquitin-activating enzyme E1 1 [Vitis vinifera]
6 Hb_003517_070 0.0949859277 - - PREDICTED: protein transport protein Sec24-like At3g07100 [Jatropha curcas]
7 Hb_000183_030 0.0968858137 - - PREDICTED: probable zinc transporter protein DDB_G0291141 [Populus euphratica]
8 Hb_000890_070 0.0998699151 - - PREDICTED: protein ALWAYS EARLY 3 isoform X2 [Jatropha curcas]
9 Hb_005181_050 0.1037197572 - - PREDICTED: phytochrome B isoform X1 [Jatropha curcas]
10 Hb_004917_010 0.104051578 - - PREDICTED: U-box domain-containing protein 13-like [Jatropha curcas]
11 Hb_002609_080 0.104840106 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH 7, chloroplastic-like [Jatropha curcas]
12 Hb_000809_250 0.1066290812 - - PREDICTED: uncharacterized protein LOC105639683 [Jatropha curcas]
13 Hb_004884_090 0.1066977295 - - importin beta-1, putative [Ricinus communis]
14 Hb_019280_010 0.1070536336 - - PREDICTED: F-box protein At5g39450 isoform X2 [Jatropha curcas]
15 Hb_004677_050 0.1076914089 - - PREDICTED: importin beta-like SAD2 isoform X2 [Jatropha curcas]
16 Hb_009296_080 0.1080774754 - - PREDICTED: probable apyrase 7 isoform X1 [Jatropha curcas]
17 Hb_002611_010 0.1081003996 - - amino acid transporter, putative [Ricinus communis]
18 Hb_000237_050 0.1089101787 - - CP2 [Hevea brasiliensis]
19 Hb_009658_030 0.1112900232 - - PREDICTED: AP-5 complex subunit beta-1 [Jatropha curcas]
20 Hb_000167_120 0.1116563129 - - PREDICTED: U-box domain-containing protein 14 [Jatropha curcas]

Gene co-expression network

sample Hb_002025_030 Hb_002025_030 Hb_000484_010 Hb_000484_010 Hb_002025_030--Hb_000484_010 Hb_000392_160 Hb_000392_160 Hb_002025_030--Hb_000392_160 Hb_000803_320 Hb_000803_320 Hb_002025_030--Hb_000803_320 Hb_003340_010 Hb_003340_010 Hb_002025_030--Hb_003340_010 Hb_003517_070 Hb_003517_070 Hb_002025_030--Hb_003517_070 Hb_000183_030 Hb_000183_030 Hb_002025_030--Hb_000183_030 Hb_000484_010--Hb_000183_030 Hb_004917_010 Hb_004917_010 Hb_000484_010--Hb_004917_010 Hb_002609_080 Hb_002609_080 Hb_000484_010--Hb_002609_080 Hb_000484_010--Hb_000392_160 Hb_001377_100 Hb_001377_100 Hb_000484_010--Hb_001377_100 Hb_000392_160--Hb_000183_030 Hb_000392_160--Hb_003517_070 Hb_001975_150 Hb_001975_150 Hb_000392_160--Hb_001975_150 Hb_000392_160--Hb_000803_320 Hb_002874_110 Hb_002874_110 Hb_000803_320--Hb_002874_110 Hb_000270_390 Hb_000270_390 Hb_000803_320--Hb_000270_390 Hb_009288_020 Hb_009288_020 Hb_000803_320--Hb_009288_020 Hb_000504_180 Hb_000504_180 Hb_000803_320--Hb_000504_180 Hb_009178_060 Hb_009178_060 Hb_000803_320--Hb_009178_060 Hb_006663_060 Hb_006663_060 Hb_000803_320--Hb_006663_060 Hb_000890_070 Hb_000890_070 Hb_003340_010--Hb_000890_070 Hb_003340_010--Hb_002874_110 Hb_003340_010--Hb_003517_070 Hb_011537_060 Hb_011537_060 Hb_003340_010--Hb_011537_060 Hb_007933_040 Hb_007933_040 Hb_003340_010--Hb_007933_040 Hb_000649_060 Hb_000649_060 Hb_003340_010--Hb_000649_060 Hb_003517_070--Hb_004917_010 Hb_003517_070--Hb_001975_150 Hb_003517_070--Hb_000803_320 Hb_001080_300 Hb_001080_300 Hb_003517_070--Hb_001080_300 Hb_000941_150 Hb_000941_150 Hb_000183_030--Hb_000941_150 Hb_001865_070 Hb_001865_070 Hb_000183_030--Hb_001865_070 Hb_015292_060 Hb_015292_060 Hb_000183_030--Hb_015292_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.83731 12.0847 4.45912 14.0265 3.09383 6.76396
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.25842 5.55689 6.62567 13.1835 17.8019

CAGE analysis