Hb_002025_050

Information

Type -
Description -
Location Contig2025: 36322-37518
Sequence    

Annotation

kegg
ID rcu:RCOM_0774580
description hypothetical protein
nr
ID XP_002521862.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9S793
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0774580 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20562: 36719-37025
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002025_050 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_003964_060 0.1136825822 - - PREDICTED: beta-glucosidase 40 [Jatropha curcas]
3 Hb_009838_120 0.1358636751 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA13 isoform X1 [Jatropha curcas]
4 Hb_001645_030 0.1370740994 - - PREDICTED: probable auxin efflux carrier component 1b [Jatropha curcas]
5 Hb_002592_050 0.1392101933 - - PREDICTED: LON peptidase N-terminal domain and RING finger protein 1-like [Jatropha curcas]
6 Hb_000866_320 0.1394530247 - - receptor protein kinase, putative [Ricinus communis]
7 Hb_000956_070 0.1410299813 - - PREDICTED: probable serine/threonine-protein kinase At1g01540 [Jatropha curcas]
8 Hb_139461_010 0.1434637417 desease resistance Gene Name: NB-ARC Cc-nbs-lrr resistance protein, putative [Theobroma cacao]
9 Hb_135720_010 0.1436343453 - - hypothetical protein JCGZ_17857 [Jatropha curcas]
10 Hb_027400_020 0.1437342484 - - PREDICTED: uncharacterized protein At5g22580 isoform X2 [Jatropha curcas]
11 Hb_000181_260 0.1442134659 - - PREDICTED: uncharacterized protein LOC105139156 [Populus euphratica]
12 Hb_024868_010 0.1449029118 - - protein kinase, putative [Ricinus communis]
13 Hb_000856_250 0.1474578657 - - short chain alcohol dehydrogenase, putative [Ricinus communis]
14 Hb_008021_040 0.1475622311 - - PREDICTED: AP2-like ethylene-responsive transcription factor ANT [Jatropha curcas]
15 Hb_000749_160 0.1490711763 - - calmodulin binding protein, putative [Ricinus communis]
16 Hb_007625_030 0.1514704906 - - unknown [Medicago truncatula]
17 Hb_029142_040 0.1521449636 - - replication factor C / DNA polymerase III gamma-tau subunit, putative [Ricinus communis]
18 Hb_155444_010 0.1534156856 - - -
19 Hb_007138_030 0.1535694836 - - PREDICTED: putative disease resistance protein At4g11170 [Jatropha curcas]
20 Hb_002518_020 0.1537562529 - - PREDICTED: uncharacterized protein LOC105631164 [Jatropha curcas]

Gene co-expression network

sample Hb_002025_050 Hb_002025_050 Hb_003964_060 Hb_003964_060 Hb_002025_050--Hb_003964_060 Hb_009838_120 Hb_009838_120 Hb_002025_050--Hb_009838_120 Hb_001645_030 Hb_001645_030 Hb_002025_050--Hb_001645_030 Hb_002592_050 Hb_002592_050 Hb_002025_050--Hb_002592_050 Hb_000866_320 Hb_000866_320 Hb_002025_050--Hb_000866_320 Hb_000956_070 Hb_000956_070 Hb_002025_050--Hb_000956_070 Hb_000070_070 Hb_000070_070 Hb_003964_060--Hb_000070_070 Hb_008727_040 Hb_008727_040 Hb_003964_060--Hb_008727_040 Hb_023956_010 Hb_023956_010 Hb_003964_060--Hb_023956_010 Hb_000676_170 Hb_000676_170 Hb_003964_060--Hb_000676_170 Hb_000749_160 Hb_000749_160 Hb_003964_060--Hb_000749_160 Hb_009627_020 Hb_009627_020 Hb_009838_120--Hb_009627_020 Hb_024868_010 Hb_024868_010 Hb_009838_120--Hb_024868_010 Hb_004659_100 Hb_004659_100 Hb_009838_120--Hb_004659_100 Hb_008021_040 Hb_008021_040 Hb_009838_120--Hb_008021_040 Hb_005679_120 Hb_005679_120 Hb_009838_120--Hb_005679_120 Hb_139461_010 Hb_139461_010 Hb_009838_120--Hb_139461_010 Hb_002304_100 Hb_002304_100 Hb_001645_030--Hb_002304_100 Hb_000243_340 Hb_000243_340 Hb_001645_030--Hb_000243_340 Hb_001645_030--Hb_024868_010 Hb_000834_130 Hb_000834_130 Hb_001645_030--Hb_000834_130 Hb_002601_040 Hb_002601_040 Hb_001645_030--Hb_002601_040 Hb_000568_020 Hb_000568_020 Hb_001645_030--Hb_000568_020 Hb_005839_030 Hb_005839_030 Hb_002592_050--Hb_005839_030 Hb_003050_100 Hb_003050_100 Hb_002592_050--Hb_003050_100 Hb_032208_050 Hb_032208_050 Hb_002592_050--Hb_032208_050 Hb_155444_010 Hb_155444_010 Hb_002592_050--Hb_155444_010 Hb_001178_090 Hb_001178_090 Hb_002592_050--Hb_001178_090 Hb_000866_320--Hb_009627_020 Hb_007625_030 Hb_007625_030 Hb_000866_320--Hb_007625_030 Hb_000866_320--Hb_009838_120 Hb_002999_080 Hb_002999_080 Hb_000866_320--Hb_002999_080 Hb_000002_360 Hb_000002_360 Hb_000866_320--Hb_000002_360 Hb_000866_320--Hb_004659_100 Hb_004282_010 Hb_004282_010 Hb_000956_070--Hb_004282_010 Hb_006501_100 Hb_006501_100 Hb_000956_070--Hb_006501_100 Hb_000014_080 Hb_000014_080 Hb_000956_070--Hb_000014_080 Hb_000956_070--Hb_008727_040 Hb_000127_080 Hb_000127_080 Hb_000956_070--Hb_000127_080 Hb_002818_170 Hb_002818_170 Hb_000956_070--Hb_002818_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0222115 0.678551 0.775985 3.46417 0.0714455 0.0187002
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0960271 0 1.56441 0.529881

CAGE analysis