Hb_002025_070

Information

Type -
Description -
Location Contig2025: 46426-48267
Sequence    

Annotation

kegg
ID pop:POPTR_0008s14240g
description POPTRDRAFT_564741; hypothetical protein
nr
ID XP_011021681.1
description PREDICTED: pentatricopeptide repeat-containing protein At5g13770, chloroplastic-like isoform X1 [Populus euphratica]
swissprot
ID Q66GP4
description Pentatricopeptide repeat-containing protein At5g13770, chloroplastic OS=Arabidopsis thaliana GN=At5g13770 PE=2 SV=1
trembl
ID B9HJN5
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0008s14240g PE=4 SV=2
Gene Ontology
ID GO:0009658
description pentatricopeptide repeat-containing protein chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20565: 46348-46699
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002025_070 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At5g13770, chloroplastic-like isoform X1 [Populus euphratica]
2 Hb_029879_150 0.1081595593 desease resistance Gene Name: NB-ARC putative disease resistance gene NBS-LRR family protein [Populus trichocarpa]
3 Hb_022693_010 0.1113239995 - - pectin acetylesterase, putative [Ricinus communis]
4 Hb_000235_040 0.1129961814 - - PREDICTED: probable receptor-like serine/threonine-protein kinase At5g57670 isoform X1 [Populus euphratica]
5 Hb_000139_360 0.1131907558 - - PREDICTED: uncharacterized protein LOC105631933 [Jatropha curcas]
6 Hb_002042_210 0.1135152672 - - PREDICTED: UPF0603 protein At1g54780, chloroplastic [Jatropha curcas]
7 Hb_016093_030 0.1144508262 - - ankyrin repeat protein [Bruguiera gymnorhiza]
8 Hb_131466_010 0.115697561 - - PREDICTED: putative amidase C869.01 [Jatropha curcas]
9 Hb_044478_010 0.1161633283 - - plastoquinol-plastocyanin reductase, putative [Ricinus communis]
10 Hb_003162_060 0.1188266825 - - PREDICTED: MATH domain-containing protein At5g43560-like [Jatropha curcas]
11 Hb_000477_090 0.1202333837 - - PREDICTED: uncharacterized protein LOC105639302 [Jatropha curcas]
12 Hb_001491_070 0.1224276603 - - PREDICTED: probable beta-1,3-galactosyltransferase 17 isoform X1 [Jatropha curcas]
13 Hb_000590_110 0.1226510326 - - conserved hypothetical protein [Ricinus communis]
14 Hb_008195_090 0.1228737839 - - conserved hypothetical protein [Ricinus communis]
15 Hb_004052_030 0.123998039 - - PREDICTED: uncharacterized protein LOC105640637 [Jatropha curcas]
16 Hb_002805_280 0.1249046473 - - PREDICTED: sugar transport protein 14-like [Jatropha curcas]
17 Hb_006291_050 0.1250218942 - - PREDICTED: polyribonucleotide nucleotidyltransferase 2, mitochondrial isoform X1 [Jatropha curcas]
18 Hb_005111_040 0.1278969414 - - glucose-6-phosphate dehydrogenase [Hevea brasiliensis]
19 Hb_004607_110 0.1306761149 - - PREDICTED: serine/threonine-protein kinase Nek6 [Jatropha curcas]
20 Hb_029991_010 0.1320703757 - - hypothetical protein PRUPE_ppa001615mg [Prunus persica]

Gene co-expression network

sample Hb_002025_070 Hb_002025_070 Hb_029879_150 Hb_029879_150 Hb_002025_070--Hb_029879_150 Hb_022693_010 Hb_022693_010 Hb_002025_070--Hb_022693_010 Hb_000235_040 Hb_000235_040 Hb_002025_070--Hb_000235_040 Hb_000139_360 Hb_000139_360 Hb_002025_070--Hb_000139_360 Hb_002042_210 Hb_002042_210 Hb_002025_070--Hb_002042_210 Hb_016093_030 Hb_016093_030 Hb_002025_070--Hb_016093_030 Hb_003162_060 Hb_003162_060 Hb_029879_150--Hb_003162_060 Hb_020956_030 Hb_020956_030 Hb_029879_150--Hb_020956_030 Hb_002336_050 Hb_002336_050 Hb_029879_150--Hb_002336_050 Hb_027472_060 Hb_027472_060 Hb_029879_150--Hb_027472_060 Hb_005532_030 Hb_005532_030 Hb_029879_150--Hb_005532_030 Hb_022693_010--Hb_000235_040 Hb_008112_020 Hb_008112_020 Hb_022693_010--Hb_008112_020 Hb_004052_030 Hb_004052_030 Hb_022693_010--Hb_004052_030 Hb_000847_030 Hb_000847_030 Hb_022693_010--Hb_000847_030 Hb_006472_040 Hb_006472_040 Hb_022693_010--Hb_006472_040 Hb_001210_060 Hb_001210_060 Hb_022693_010--Hb_001210_060 Hb_000235_040--Hb_001210_060 Hb_000076_060 Hb_000076_060 Hb_000235_040--Hb_000076_060 Hb_000235_040--Hb_027472_060 Hb_001538_080 Hb_001538_080 Hb_000235_040--Hb_001538_080 Hb_000696_060 Hb_000696_060 Hb_000139_360--Hb_000696_060 Hb_008195_090 Hb_008195_090 Hb_000139_360--Hb_008195_090 Hb_044478_010 Hb_044478_010 Hb_000139_360--Hb_044478_010 Hb_172426_070 Hb_172426_070 Hb_000139_360--Hb_172426_070 Hb_029991_010 Hb_029991_010 Hb_000139_360--Hb_029991_010 Hb_002387_010 Hb_002387_010 Hb_000139_360--Hb_002387_010 Hb_131466_010 Hb_131466_010 Hb_002042_210--Hb_131466_010 Hb_002042_210--Hb_044478_010 Hb_006291_050 Hb_006291_050 Hb_002042_210--Hb_006291_050 Hb_002805_280 Hb_002805_280 Hb_002042_210--Hb_002805_280 Hb_003033_020 Hb_003033_020 Hb_002042_210--Hb_003033_020 Hb_005111_040 Hb_005111_040 Hb_002042_210--Hb_005111_040 Hb_000329_440 Hb_000329_440 Hb_016093_030--Hb_000329_440 Hb_060253_010 Hb_060253_010 Hb_016093_030--Hb_060253_010 Hb_005569_010 Hb_005569_010 Hb_016093_030--Hb_005569_010 Hb_001491_070 Hb_001491_070 Hb_016093_030--Hb_001491_070 Hb_000984_160 Hb_000984_160 Hb_016093_030--Hb_000984_160 Hb_131876_010 Hb_131876_010 Hb_016093_030--Hb_131876_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.688902 9.63832 10.5227 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0194625 0.957347 1.17791 23.9185

CAGE analysis