Hb_002025_090

Information

Type -
Description -
Location Contig2025: 51263-62854
Sequence    

Annotation

kegg
ID rcu:RCOM_0774930
description Lignin-forming anionic peroxidase precursor, putative (EC:1.11.1.7)
nr
ID CDP06406.1
description unnamed protein product [Coffea canephora]
swissprot
ID Q02200
description Lignin-forming anionic peroxidase OS=Nicotiana sylvestris PE=2 SV=1
trembl
ID A0A0E0R3B3
description Uncharacterized protein OS=Oryza rufipogon PE=4 SV=1
Gene Ontology
ID GO:0005576
description lignin-forming anionic peroxidase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002025_090 0.0 - - unnamed protein product [Coffea canephora]
2 Hb_003711_030 0.2254408643 - - PREDICTED: uncharacterized protein LOC102621950 [Citrus sinensis]
3 Hb_011478_010 0.2274045082 - - -
4 Hb_115656_010 0.2325788888 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RPM1-like [Jatropha curcas]
5 Hb_057451_040 0.234272008 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
6 Hb_000268_100 0.2497681903 - - -
7 Hb_030370_010 0.2534552245 - - PREDICTED: uncharacterized protein LOC104896222 [Beta vulgaris subsp. vulgaris]
8 Hb_043792_020 0.2584998981 - - Retrotransposon gag protein [Medicago truncatula]
9 Hb_001799_220 0.2646938415 transcription factor TF Family: AP2 Ethylene-responsive transcription factor, putative [Ricinus communis]
10 Hb_002123_030 0.2665910231 - - hypothetical protein VITISV_003767 [Vitis vinifera]
11 Hb_076226_010 0.2729706314 - - hypothetical protein VITISV_030432 [Vitis vinifera]
12 Hb_009042_010 0.2768107236 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
13 Hb_188450_010 0.2768307105 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
14 Hb_000599_070 0.2772428094 - - PREDICTED: patellin-4-like [Jatropha curcas]
15 Hb_001519_210 0.2790637222 - - hypothetical protein B456_003G032500 [Gossypium raimondii]
16 Hb_012253_020 0.2792995988 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
17 Hb_153665_010 0.2808371156 - - PREDICTED: uncharacterized protein LOC104245945 [Nicotiana sylvestris]
18 Hb_005405_010 0.2811967171 - - -
19 Hb_004762_020 0.283465279 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
20 Hb_100288_010 0.2894237728 - - PREDICTED: uncharacterized protein LOC104901272 [Beta vulgaris subsp. vulgaris]

Gene co-expression network

sample Hb_002025_090 Hb_002025_090 Hb_003711_030 Hb_003711_030 Hb_002025_090--Hb_003711_030 Hb_011478_010 Hb_011478_010 Hb_002025_090--Hb_011478_010 Hb_115656_010 Hb_115656_010 Hb_002025_090--Hb_115656_010 Hb_057451_040 Hb_057451_040 Hb_002025_090--Hb_057451_040 Hb_000268_100 Hb_000268_100 Hb_002025_090--Hb_000268_100 Hb_030370_010 Hb_030370_010 Hb_002025_090--Hb_030370_010 Hb_003711_030--Hb_011478_010 Hb_003711_030--Hb_057451_040 Hb_167183_010 Hb_167183_010 Hb_003711_030--Hb_167183_010 Hb_003711_030--Hb_000268_100 Hb_002122_020 Hb_002122_020 Hb_003711_030--Hb_002122_020 Hb_011478_010--Hb_167183_010 Hb_011478_010--Hb_057451_040 Hb_011478_010--Hb_000268_100 Hb_011478_010--Hb_002122_020 Hb_115656_010--Hb_057451_040 Hb_001282_030 Hb_001282_030 Hb_115656_010--Hb_001282_030 Hb_004212_040 Hb_004212_040 Hb_115656_010--Hb_004212_040 Hb_012092_080 Hb_012092_080 Hb_115656_010--Hb_012092_080 Hb_142570_010 Hb_142570_010 Hb_115656_010--Hb_142570_010 Hb_057451_040--Hb_000268_100 Hb_057451_040--Hb_004212_040 Hb_027357_010 Hb_027357_010 Hb_000268_100--Hb_027357_010 Hb_171685_040 Hb_171685_040 Hb_000268_100--Hb_171685_040 Hb_171685_030 Hb_171685_030 Hb_000268_100--Hb_171685_030 Hb_002123_030 Hb_002123_030 Hb_030370_010--Hb_002123_030 Hb_001799_220 Hb_001799_220 Hb_030370_010--Hb_001799_220 Hb_012253_020 Hb_012253_020 Hb_030370_010--Hb_012253_020 Hb_000599_070 Hb_000599_070 Hb_030370_010--Hb_000599_070 Hb_009042_010 Hb_009042_010 Hb_030370_010--Hb_009042_010 Hb_188450_010 Hb_188450_010 Hb_030370_010--Hb_188450_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0.034249
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0331889 0.0556769 0.147956

CAGE analysis