Hb_002025_140

Information

Type -
Description -
Location Contig2025: 87517-97669
Sequence    

Annotation

kegg
ID rcu:RCOM_0775190
description UBX domain-containing protein, putative
nr
ID XP_012072427.1
description PREDICTED: UBX domain-containing protein 2 isoform X1 [Jatropha curcas]
swissprot
ID Q94JZ8
description Plant UBX domain-containing protein 7 OS=Arabidopsis thaliana GN=PUX7 PE=1 SV=1
trembl
ID A0A067KPW0
description UBX domain-containing protein OS=Jatropha curcas GN=JCGZ_04859 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20572: 87534-97838 , PASA_asmbl_20573: 87875-97838 , PASA_asmbl_20574: 90233-90537 , PASA_asmbl_20575: 91234-91789
cDNA
(Sanger)
(ID:Location)		 039_P06.ab1: 92746-97838

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002025_140 0.0 - - PREDICTED: UBX domain-containing protein 2 isoform X1 [Jatropha curcas]
2 Hb_000573_040 0.0481810989 - - hypothetical protein JCGZ_19524 [Jatropha curcas]
3 Hb_004531_090 0.0731020224 - - PREDICTED: VHS domain-containing protein At3g16270 [Jatropha curcas]
4 Hb_000165_130 0.077198716 - - PREDICTED: uncharacterized protein At5g39865-like [Jatropha curcas]
5 Hb_000173_370 0.0776211158 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 7-like isoform X1 [Jatropha curcas]
6 Hb_003216_110 0.0816487897 - - PREDICTED: vacuolar protein-sorting-associated protein 11 homolog [Jatropha curcas]
7 Hb_004032_350 0.0838062415 - - PREDICTED: splicing factor U2af small subunit B-like isoform X1 [Musa acuminata subsp. malaccensis]
8 Hb_001408_090 0.0851467187 - - PREDICTED: uncharacterized protein LOC105629659 [Jatropha curcas]
9 Hb_012760_200 0.0851712848 - - protein phsophatase-2a, putative [Ricinus communis]
10 Hb_005725_070 0.0852132838 - - conserved hypothetical protein [Ricinus communis]
11 Hb_005028_010 0.0854392964 - - interferon-induced guanylate-binding protein, putative [Ricinus communis]
12 Hb_000134_360 0.0892109785 - - PREDICTED: protein gar2 [Jatropha curcas]
13 Hb_009421_100 0.0895442703 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein Os01g0234100-like [Jatropha curcas]
14 Hb_000088_180 0.0900133449 - - hypothetical protein JCGZ_11198 [Jatropha curcas]
15 Hb_000025_750 0.0903534752 - - PREDICTED: nuclear speckle splicing regulatory protein 1-like [Jatropha curcas]
16 Hb_000684_180 0.0913179543 - - PREDICTED: importin subunit alpha-9 isoform X1 [Jatropha curcas]
17 Hb_001034_020 0.0924886839 - - PREDICTED: uncharacterized protein LOC105641929 [Jatropha curcas]
18 Hb_000212_280 0.0941611006 - - PREDICTED: putative RNA-binding protein Luc7-like 2 [Gossypium raimondii]
19 Hb_000363_340 0.0966531604 - - PREDICTED: syntaxin-52-like isoform X2 [Jatropha curcas]
20 Hb_000640_210 0.0968044597 - - hypothetical protein JCGZ_14045 [Jatropha curcas]

Gene co-expression network

sample Hb_002025_140 Hb_002025_140 Hb_000573_040 Hb_000573_040 Hb_002025_140--Hb_000573_040 Hb_004531_090 Hb_004531_090 Hb_002025_140--Hb_004531_090 Hb_000165_130 Hb_000165_130 Hb_002025_140--Hb_000165_130 Hb_000173_370 Hb_000173_370 Hb_002025_140--Hb_000173_370 Hb_003216_110 Hb_003216_110 Hb_002025_140--Hb_003216_110 Hb_004032_350 Hb_004032_350 Hb_002025_140--Hb_004032_350 Hb_000684_180 Hb_000684_180 Hb_000573_040--Hb_000684_180 Hb_000134_360 Hb_000134_360 Hb_000573_040--Hb_000134_360 Hb_000212_280 Hb_000212_280 Hb_000573_040--Hb_000212_280 Hb_005028_010 Hb_005028_010 Hb_000573_040--Hb_005028_010 Hb_000573_040--Hb_004531_090 Hb_000779_040 Hb_000779_040 Hb_004531_090--Hb_000779_040 Hb_000291_120 Hb_000291_120 Hb_004531_090--Hb_000291_120 Hb_000211_090 Hb_000211_090 Hb_004531_090--Hb_000211_090 Hb_001034_020 Hb_001034_020 Hb_004531_090--Hb_001034_020 Hb_000849_100 Hb_000849_100 Hb_000165_130--Hb_000849_100 Hb_000165_130--Hb_000134_360 Hb_001969_040 Hb_001969_040 Hb_000165_130--Hb_001969_040 Hb_002493_090 Hb_002493_090 Hb_000165_130--Hb_002493_090 Hb_000732_020 Hb_000732_020 Hb_000165_130--Hb_000732_020 Hb_004032_460 Hb_004032_460 Hb_000173_370--Hb_004032_460 Hb_000088_180 Hb_000088_180 Hb_000173_370--Hb_000088_180 Hb_000173_370--Hb_004531_090 Hb_000173_370--Hb_000573_040 Hb_000173_210 Hb_000173_210 Hb_000173_370--Hb_000173_210 Hb_000230_370 Hb_000230_370 Hb_003216_110--Hb_000230_370 Hb_001408_090 Hb_001408_090 Hb_003216_110--Hb_001408_090 Hb_003216_110--Hb_001969_040 Hb_003216_110--Hb_005028_010 Hb_002986_050 Hb_002986_050 Hb_003216_110--Hb_002986_050 Hb_000076_290 Hb_000076_290 Hb_004032_350--Hb_000076_290 Hb_012760_200 Hb_012760_200 Hb_004032_350--Hb_012760_200 Hb_000152_890 Hb_000152_890 Hb_004032_350--Hb_000152_890 Hb_000367_290 Hb_000367_290 Hb_004032_350--Hb_000367_290 Hb_013753_010 Hb_013753_010 Hb_004032_350--Hb_013753_010 Hb_004032_350--Hb_001034_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
258.913 68.0201 30.4225 30.4638 274.822 231.474
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
113.284 37.9356 69.8056 34.7143 19.9022

CAGE analysis